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CIS-REGULATION

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  1. Region 'REG00001016' > 
  2. Region 'REG00001029' > 
  3. Region 'REG00001014' > 
  4. Region 'REG00000200' > 
  5. Region 'REG00000192'

Cis-regulatory Region

Name

FoxF -2989/64

Short name

n/a

Region ID

REG00000192

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Jeni Beh (2007-10-02)

Annotator

Patrick Lemaire (2007-11-05)

Curator

Delphine Dauga (2010-03-31)

View position in WashU

Description

Transcription start site is based on the start of the first exon of the KH transcript model.

Coordinates and corresponding name in the paper : -3052/+1.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C3.170 (FOXF1; FOXF2; FOXL1)

Construct(s) made to test this region

CONS00000191: pFoxF -2989/1::LacZ

Show in situ data
Overview of functional TF binding sites in this region

3,597,4093,600,461

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 Ets n/a TTTCCG [3,598,263 / 3,598,268]
2 Ets n/a AGGATG [3,598,354 / 3,598,359]
3 bHLH n/a CACTTG [3,598,380 / 3,598,385]
4 Ets n/a AGGATT [3,598,396 / 3,598,401]

Sequence

Aniseed Coordinates: [3,597,409 / 3,600,461] on scaffold KhC3

This sequence was found using a blast on the JGI site with the sequence includes in the paper.

Show sequence

Length: 3,053


GCGAGTGTCGCTTTGATCGCACTACGTTTATCAACTGACTATGACGCAACAAACATGCCC
AATGTCCATCGTCGTGGACGTAAAACACACCGCCTAATAATTATGTCGAAGTTAGGGGTA
GGATTTTATGTAGAGGCGGAAGATCAATAGATAAAGATAGCGGATTTTACTGACTGGGCG
ATATTTTTAGGTTATAGGGTAAGATGGTTTATGTTTTTATTCTCTTTTTATATTTAGTAT
AAAATAAAGATCATTTACATGTATATTTATGTACCGAATCCTCACGGCGATGTTGGTTGG
TAAAACTAGTTATCTTTACGACTCTAAAAGTTCGTTGTTAAATTTTAAAACTCGTGTAGG
AAACGGGGTTATTATGTGCTAACGATATTCAATTTTACCCTAACAGCGGTATTATAAATT
TGGTTAAAGACTCTATATAAAAATCATTGGAGTAAAATGCAAGTAACTTTTTAGGTGTGT
AGATTTTTCGCTTCAAATACGTTTAAAAATAAAACTGAAACGCTTTTCGTCGTAATAAAA
TAGCGTTACGCACATATATGGCCGATGCAAAATGGTGACGACGGAAAATGTATTACTGGT
GGTAGTTTGCAAAGTGTCGATGTATTTAACAATTTATAATGAAAATCGGCACATTATTTG
GTACAATTCAAAAATTGTGAAGCCATTTTTACAAATTCAAAAATTGTAAAGTAACAGTTG
CTGGTACAAGGTTATTATTGATGTTGTATTCTTGTATAGACTGGTGAAACTACAATGCTT
TAATGTTAATGATTCTATCAGTTAACATTCTTACACGAATAACTGTGGCAATGGATTAAA
ATTCAGGCAAAACTTGGGTTGTCGGTAAAATTTTGTCACGAAAATGGCGGCTTGATGCTA
AACGTCGGCAAAATAAATTTAAAATCGCGTATTGGATATGGGTTTAAATTTAGGTCAAAA
AACGTGAGTTTTATATTTTCGGCGAAAGTGCACGAAGGTGGAGGTATTTAGAGAACGGGG
CGTTACAGCTTTGGGCTCTCGGGCGTCCGCGCGAAAAAGCGACGAAAAAATGGACTTTCG
CGACTCGCACACTTGACGCGGCTACCGCGGAGTCGACCGGGTGCAAGTCTAACGTTCAGT
CGGTGTCGTGGAAGGCTGAGCAGTCGCAGGGTTGCTGGATTAGCGGGGAGTGCCGGCTGC
TAGAGGTTAATGCAAAGGCGGGGTGGCATGTTGGTAAACAAATTCATGCAAAGTGTTTCC
GCCGGGAATAAAAGGGTTGGGTCGTGAGTTAGATATAAAGGCTCAGTAAACCAGCTTCCG
TTCGCCAAAGGCCCGGTACTTAGCAGGAGTATGTTTGGTAAATGTTTTTTGGGTGCAATA
TGTGTAATATATAACTGAAGTTTGCTGAAATGTGTACATTGTAACAGAGCCGCAGCAAAA
ATTTAATTACTTTTTAAAGCTCTAAAAATGTTGCGATAAAAATCCAGATAATTTGGCTGC
TGTCGCTTACACTTCGTTGCACTGGGTTTTTACCTAAATTTGTAGGCATTTTGTAGCGCG
GGTGGTCGGACGTATATAAGCTCAGTAAGGTTAGGCTTCTGTGAGCACCAAGCCTGCTTT
CCATGCTCCCCTTGTGTAAGCGAGAAAGTCGGCGACATATAGTTCCGCAGGGGCTTATAC
AGGCTGTCTGGGCCTGCCTTTCGATGTACTGCCTAAAAACGTTGCTATTATGCCCGACCT
ACCAAAGCCATTGCAGCAGAAAGCGTGAATAAACCTACAACTAATGGTTTTTACTTAGCG
CGGTATTTCCCTACTCGAATGTGGTGTTATACTTGTCTGGAACTTTTTCGTTCGAAAATT
GTTCCGGGTTGCTGGACTGGTCTACTTATTCAAGCGCGCGTATTAATGGAAAGTGTATGC
GTTGTATCTTTCGTTAAGTGCTGGCGTCGAGCAGGGCTAACCTCATTTCGATTTGACGAT
TCGGGTAAAACCGAGCGATGGACAGGACCTGGAAATGGGAAAGGCTTACTAGAATCAGGG
TCGAACGAGATAAGAAGATCAGGATTCGCAAATTAGCACTTGGCTTTTTTACGTAGAAAC
ATAGGATGTCCGCTGAGCCCCTTATATATACGTAGTACGAATCACCGGCCTGGCGTTGTA
TAAGCGAGACCAGCGTGGACGAAAAGGTAATTGTTTCCGAATGGATCGCGTTCGAGAGAG
CAGCGCTTTAATTAATTACCGAGGTGGTCGCCGCTCCGCCGCGGGCGAGGTAGCAATTAT
ACTTAATAAAGAGCCGTTAAGAAGTAGCAACTTTCGCCATTCAGTCAGTCGTCGGCGCAG
TAAATGTGTAGCTTCGTTTATGGGGATTATTCACGAATTAAGTCAACAAGTTTATAGCAA
AATTACGAGTCGTAAAGGTTGCCGATTCTATTCGAGGTATTTCGGTTTACAAGCCATGCC
CCTTTACGGCGTTTTGGTAAAACTTAAACTAAAATAAAAATATGCTTAAAGTTATCCTTA
GACAAAAATCACGAGTTTGTACTAAATATAACATATACATATAAAATATAAGGAGATATA
TTTTTGTCGTGCCAGTTTCACACGATCAAGGCGTGTTAAAAATAAATACAGCGACTAGAT
TTAGAACTTGGAGCTATTCTTACTGAGCCATCTTGGATTGTTTATTTTAAAATACAGACA
GAGTTTATTTTGAAAGTAAACTTGGAGAAACGTTTGTAGCATCAAGACGTGATAGACAGA
ACTGTTTACTACGCGCTGAAGTTGTTTAATGTTTGAGCGATTCGGTTTGTTTGCTGTTTA
TAAAACTCTGATGTAGCGGTTGGCCTAAGACTGTTTTGTTTGCCTGATGTAATCTGTCTG
CTATTTAAATAAGAACAGAGAAAGCAAGCGTTCTTATTTTTGCTAAATACAAAATATTTT
ATTAAGTATTTAGGAGTATTTATAATTTTAACCTGTGTTCTTTATTTAAAAGATTTCTTT
TAAGCGCTTTTAAATTATTACAAGACCAGTTTTACAACATCAGTTATTGAAGT

Reference(s)

Beh et al. (2007). FoxF is essential for FGF-induced migration of heart progenitor cells in the ascidian Ciona intestinalis. Development 134(18):3297-305

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