- Region 'REG00000191'
Cis-regulatory Region
Name
Ci-IkB -885/115 delta NF-kB
Short name
n/a
Region ID
REG00000191
Status
Curated
Origin
engineered region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Narudo Kawai (2007-08-05)
Annotator
Clara Degos (2010-07-22)
Curator
Delphine Dauga (2010-04-08)
Data of promoter from Kawai, N., Takahashi, H., Nishida, H., Yokosawa, H. 2005. Regulation of NF-kB/rel by IkB is essential for ascidian notochord formation. Dev Biol (277): 80-91.
Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.
Coordinates in the paper : -1,0kb/-1bp
2,383,6272,384,626
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,383,627 / 2,384,626] on scaffold KhC4
This sequence was found using JGI V1.0. Motif GGGAATCCC deleted was replaced by "-".
Show sequence
Length: 1,000
AACAAACTATATATGGAAAATTACTACCAAAATGTGATTATTATTACTGTATTACTCCCG
TTCATACTACTGTGTTCTTGCTCTGGATAAAACCTTATTGTAAAATG----------AAT
ATCAAGAATTGAGTGTTGTGTACAGAAAGATTGCAAGTCTCCTCATAGTATTTTTAGGAA
TCGCACAGAATAATTCTGTTTAACTTAAGGGGTTTTCTAATCTCGTTTACATGAAACTTT
GTTTGTGACGCCGCATAGCATTATTGTTGGTGTATTTGCCAAGCAATAAAAACGCATTCC
AACCGGCCAATATAATATTAAAACCCTATTACTTTTTGTTTGAACAAGAAAGAATGACCT
TTTGCAGTGTTGCAAATATGTGGAAGTGAATGCATTCACTTGTTTCGATTGCGTTGTGCC
AGTGTAATGAGTATGTACGAAACCTAGTAGGCGAAAAGATATTTGTAGCGCTATTCACGC
TTTGTTTGGATGGTGTGACTAAGAGAATCGTGATTCAAGTCAAATTATCGGAGCTGACCT
CGGCACGGAACAAATATAAACCACCACAGACTACGTTTCAATTGGTTTGTATGTACTGGT
GGTGAAACGACGTAAAGTCCCGGATGTCTAGCTGACAGTGTTACACGATAACATATTTCA
CAAACCATTGCGATTTTGAATATTTAGCCAATAGCGTATAAAGATAAACGCTGTAGAGTA
ATTAATACCAAACTACCAAGCTGTGTTTTACTTATAAAGGTTTTTGTGTGAATATTAGTA
AAAGATATATCTTTACGTTTGTATGAAAAATTAGTCTCGGCAACACTGCAAATTTCGGTA
CTTTCCAAAACTCCGCCGTAAGAAAAAAAGCTTATTCAGCTCTTGCCTTTGTCTGTTGGT
TTGGGTAATTTCGTTGTTCGAAGCGTTGAGTTAAGAGTTGTAGATTACCATTTTAGTTGA
TTTGTTATGCTTTTAACCAGTTATAGTTCATTTCGTCAAA
