- Region 'REG00000524' >
- Region 'REG00000187'
Cis-regulatory Region
Name
Ci-Gai1 -4208/-1
Short name
n/a
Region ID
REG00000187
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Reiko Yoshida (2007-08-02)
Annotator
Delphine Dauga (2010-01-11)
Curator
Delphine Dauga (2010-02-24)
Region from -4208bp to the start codon allows expression in the
nervous systems (in the adhesive organ, brain vesicle, visceral ganglion, and dorsocaudal epidermal neurons on the dorsal midline
of the tail) and in the mesenchyme. No GFP expression was observed in tissues other than the nervous system and mesenchyme cells.
The region between -3176 and -3090 indicates a highly conserved region, Gai1-CNR.
- Ci-Gai1 -4208/-1 REG00000187 [ regulatory_region (extended_promoter) ]
- Ci-Gai1 -3395/-8 REG00000238 [ regulatory_region (extended_promoter) ]
- Ci-Gai1 -4208/-8 delta -3177/-3089 REG00000253 [ regulatory_region (extended_promoter) ]
- Ci-Gai1 -4208/-994 REG00000255 [ regulatory_region (extended_promoter) ]
- Ci-Gai1 -3914/-994 delta -3696/-1463 REG00000265 [ regulatory_region (extended_promoter) ]
4,935,4134,939,619
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,935,413 / 4,939,619] on scaffold KhC1
This sequence was found using JGI V1.0. Relative coordinates were taken in the articles (+1 refers to the first exon of JGI gene model).
Show sequence
Length: 4,207
GTGACCTTTCATTTGCTGCTTTATCGTCTGTGGAGACTGTGCAACCCATGATTCCGGCTG
TGCTTGTTCGTATAAACACCTAATAGCAGATTAAAAGCTGTTTTACGCCAAGCGCCCTTA
ATGTTACACCTGCAAGCATATATGGTGCAAGGTATACAGATTAATTGAAAGTCCTTGTAT
TTTCAAACAGAGATAGCTCGTATGAGAATCAAGGGTAGGATTTAACCTGACACATTAGAC
ATTATCCCATGGCAACTCGCAACATGACTACTATCTTTGACTAAGTTATTTATTAAACTC
TTAAAGCTTTTATATTTATACCTGCAGTCCACAGTCACTACTATAATAAAGCAGAACCAT
ACCAGTACAGGTAGATTTAGCCAATACAAAATAGTACAGATCTAAATTATTGAAAGAGTG
GTTGTAAAATCTTTTAAAAACATAAAGACGCTATTGGCAGTTATACCTTGAACTCACAAA
TGTAATTGTATCACAAAGTTTCTAACATATTTCGAATAAAACTAAAAGGAGAGAAGACTT
CTTGAGCAAGAAACAAAATCATGTAAAATACACAAGCATAACATTGTAATGAGCAGCATT
GTTTTCATGTGGTTAATAATGATTAATATTAAAAGAAAACAAGCTAACTTCCCATAGCAG
GAAGCGTAGTAAGCCTAGCTAGTAGCTTTGCAACCAGCTGTAATAAAACGATTAATTATA
ATGACTTATAAATTTCATGTGAGTTTTTGGAGTTGATTAAAATTATTGACCTTAAGAAGT
AGCAGTTTAAATGGATTGTTTATAAACCATCAATGCAATTTTGCTTTACTGCATATGACC
AAAGCAGTATGGTTATTTTGAGTAGTCAACTAGCCATACACATGTGGAAGCCACACTCCT
ACACAGTTTATGTATGGTAGCACAATCCTACTTGTTGTTCAAACTAAAGATAGAAAATGA
TAAAAGTGGCTTATCAAATCCCCATAAAATTAGCACTGTTATAAATTTAAATAAATAGAA
AAGCCAAATAAATAGAAAACCCAAAACTTACCTGAACCCAAAGGGATGAAACAACCGTGT
CCTGTAGAAAGGTTTTGTAGATAAATAGAAAAGTTAGAATGGAAATCAACCTTTGTCTTC
TTTCTTAGATATCCAGTTTGTATAAAATCGTAAAATAAAAATGCTTAGCTCAAATCTACA
ACAGAGAACATAACAGGATTAAAGTATATAAGCAGTCGACACATACAAGATACACGTAAC
ACAACTGGCTGGCTATTAGACTTATATTATAAATGAGTCACCTCAGAGTAGTTGACGCAT
TACAAAAACAAAACGTACTCAAGTATTCATTGTTAAGCACACGAATTCAACTGAAGTAAT
TAAATAATTATTTTAATAGATCACTCCTACTGTATATACTAATTGAGAGGGTCTATACTT
AACCAGTGTACGTCACTAATTGTTTAGCCAAAGTTGATTGGAATATAAACACTACTTAGA
TATTTATATACGCACACAAGTTACCTCGATATAGAAACAAATTGTCATTTATTAATTTGA
TATTGTGAAAAATCAACCATAGTTTTTTTTAACAAGAACCTTTTTCTAAAATGGTAACAT
GATATAATATATACATACTGCAAAGCAGTTTTATTCATATATTAAGTGGTTTTTTACATA
ATTATAGTATTACTAATTTTGGAAAACAAATTATTTTACAGGCTGTTAGTTGCCCTGATT
AATCTATACAGAAAAATTTTGAAATGGTCCTTCAAGCAAATAATCAACATTTTGGTGGCA
TACTGACATGATAAGGGTTAATGAATTATTGCATCCAACACATGGGTTATATATGCCATA
AAATCCAACAATAAAAGGACAGGATTCAGTTCTATTGCCTTTATCAAGAGTCATAAACTG
ACAACAACAACAAGGCAATATTCGTAAATTTATTTTACATACGTCACATAATAAATTGCT
TTATGAACCCAAATTATTTAATAATACCAATATCTATAAGCTATGACTATACAAAGGCAA
TCATCCTTTTAAGGACTGATGTTGCAACCAACATACCTTGAGTATTGCAATTCTCTGTTT
TTATATTATACACAAAATCATAATACATTATTATATAGCATGACAAACCAGACTTCATAT
GACAAAACCAAAGCAATTTAGACTAAATGTGACGGGTTTTCTAAAAATGGGCTGACTGGC
TAAATGTACGGCATAAGAGCAGAGATTTAGGTCACAGTTGATCCATTATCCAAACACTAA
AAAAGTATATATCGGCTATCGCCCTGATTGGAAGTAATCGCCAGTTACGGCTTTCCAAGC
ACAGGTCGTTTGTAATCAATACTGCTGTATTAAATTTAATAATTAAAGAAAAGATCGGGA
CCGCTCAAAAATTCTTTTTAAATCTTGACAAAAAATATCCTCATCGCAAACACAATATTT
TCAACTCGGTTTGAGGCAAGCAAAAAATAAATATTCACTCTATATATATATATATATATT
TGCTGTTGAAGGTACCATTTTGTTTTTAATCTTTTTTCAATTGTTGTTTTTGTAGCCATT
ACTACCTGAATCAACAAATACTCCACAATTATTTTAATAGAACAAAAGTGTACAAGAGAG
CATACCAGCTCTTGAAACATAAGGTAGTTAATACAAAAGCAAAACCAAACTGGTTAAATC
TAAGTGCTATTAAAGTTTTACCTTTGCAAACTACATAGTAAAATACTTCCATAGTCAATT
TGAAGGCCGTATATTGTTGCACACCTTTTAACTTTAAAAATTACCTTATAACACTTTTAC
ACTCACTTTATAACACTTCAACTGATGAATACAACGACCTTGCAGTGGCTACTATATGAT
GGGAAAACAAATACAAACGCTCAGTTCTCATACATCGGAAATCATTTCACAGAACCAACA
AATAAGCGCACTACAGGGAGGACCTAGATTCTTATTCTTAGCACGGAACTTAGTAATATT
GTTTACTAACGTGTTCACATTTTAAGCACACTCAATTACACCGTACATAGCTGAAAACCT
AATATTACAACGGCAATGTACACCACTCGCAAACCGAATACGCCCAACTATCGATCCACT
CCGCTTCTGCGCGTTTCTTCTTTCGTTCTTGATGACCTCATTTCAAAAATCGATTTTTTT
TTTTCTTTTTTTTCGCGCAATCCGCGATAAGCAATTGGGGTATAAGTGGACTTGCAACAA
AAACAAATTTAGTTAATATAAATGTGTTAACCTAGTTTTCTCTACAATGTATGTATTTTT
TTAAAGTAAAATATTGTTAAGAATAATTTCAAAAATAGCGGGTACCAGAAAGCAACCAGC
AAAAATGACGTCACTGAAAAATGAGAGGTCGTTTCTGATTGGTTAAAATGAGTTCAAATT
TTACGATGTTTTTGCATCGTTTGACCGAAGGGATAAATGTAACCTCTTTGCCACTGTTTT
TCTCAAACGTATATGAGTCATCGGTGTTTAGTCAGTAATATTTAATAAAGGGATTCTTCC
CACAATAAACCCAAAACAAGTTTTACCAACCTAATTATATGCGTTGTGGTTTATGATACA
ATTACAAAATAGTTCTTTCTCACATGACGCAGAAACCCTGTTAGCCTGTTTATTACAAGC
AGTTGATTTCACGAACCATGTTTCTGCAACCAATTTAAAAATGAATTTTTTTTAAAGAGT
TTGTAACATTGCAACCTAAAGAAATGTGAAACAATACACAAACACAACATTGCTTGAGGG
TATAAATGGCAATTAAGATCTAATCAATCAACGCCTAACTAAACCACAGAAATTCCTTTA
TAAATATTGTTAATAGTTGATATTTAAGCGAAATCCTATTTAAAGCTGTATAGAGTTCTA
ACCAAAATAACACCTACTTTTGTGATATCTTGTATTTCCTTTGTAAATTAAATTGAAATA
TGGAAAACGTTTTAAATAAAAACACAATTTCATATTGCACTATAAATAGGTTTAAAATTA
TATAAGCAATATACTGCAAAAAATCGATGAAAGAAAGAAATTTAATATGTTTTACAAACT
GTTCATTTTAGAACACTGGGGCAAAAATACTATAATCAACATAAATGTCTGCAATATTAT
TTAATATTTAACTTTATGCCTAGCTTGTTAACAAAGATCCAGATCGTCTGATTGGCTAAA
ACTGGTC
