- Region 'REG00000186'
Cis-regulatory Region
Name
Ci-sFRP1/5 -1493/-1429
Short name
n/a
Region ID
REG00000186
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Clément Lamy (2007-07-31)
Annotator
Jonathan Luchino (2007-07-31)
Curator
Delphine Dauga (2010-02-26)
Region from -1493 to -1429 of Ci-sFRP1/5 Drives no expression. This region lacks essential Fox binding sites, and is named sFRP-67 (Lamy et al, 2006).
Modification of Ci-sFRP1/5 -1493/-1405 by deletion
- Ci-sFRP1/5 -2000/1 REG00000223 [ regulatory_region (extended_promoter) ]
- Ci-sFRP1/5 -991/1 REG00000224 [ inactive_region ]
- Ci-sFRP1/5 -1999/-933 REG00000225 [ regulatory_region (extended_promoter) ]
- Ci-sFRP1/5 -1783/-1083 REG00000131 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1601/-1339 REG00000217 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1405 REG00000132 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1429 REG00000221 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1493/-1405 REG00000222 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1405 Fox1-2 mutated REG00000228 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1405 Fox3 mutated REG00000233 [ inactive_region ]
- Ci-sFRP1/5 6-fox sites REG00000241 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1601/-1430 REG00000219 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1523/-1405 REG00000132 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1601/-1339 REG00000217 [ regulatory_region (enhancer) ]
- Ci-sFRP1/5 -1783/-1083 REG00000131 [ regulatory_region (enhancer) ]
33,94834,011
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [33,948 / 34,011] on scaffold KhL171
Show sequence
Length: 64
TGTCCCGTTAACAGATTAGGAGTTGGTGCCAGAGGATTGATTTCATTGTAATCTGTTGGT
GTTG
