- Region 'REG00000173'
Cis-regulatory Region
Name
Ci- beta gamma Crystallin -974/1
Short name
n/a
Region ID
REG00000173
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Sebastian M. Shimeld (2007-05-06)
Annotator
Delphine Dauga (2010-01-27)
Curator
Delphine Dauga (2010-02-24)
The 1kb intergenic region of the head-to-head-oriented Cubilin and Ci-beta-gamma crystallin genes drives the the full expression pattern of the Ci-beta-gamma Crystallin gene.
16,76217,735
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [16,762 / 17,735] on scaffold KhS605
This sequence was found using a blast on the JGI site (http://www.jgi.doe.gov/), it is the intergenic region of the head-to-head-oriented Cubilin and Ci crystallin genes (scaffold 605).
Show sequence
Length: 974
TACGTCATAATAAACATTTCAATGGGTTAATTCTTACTGTTCGGTTGAAACTCTTGAATC
CACTATGACGTCATCATCGTCGCTACAACCGCTATAAACAGCGAGAAACAAAATAAAAAC
AATCGACTTCATTACGGAAGAGTTGGGTCGAAAGTGGTTGTTGCATGAAATATATGTGTG
TTATATCTCGGTGCTAAGTGGTACAACAAACAAATAAAACGTCTGGTTTATGAGATGCTC
GCGTGGTACGGGCTATGTGATGTCATAATACCTTTGTCTATTATCCTTGTTACGACATAA
TTACCATGAAACAGCATTGTGACGTCACAGTGCTGTTTGTGTTGGACAAACAACACGTGG
TTTCTACGAGGGGGAATCCCCTCTCTGTCATTATTACGTATGATGACGTATAATATCGAT
TATTATTCACCATCCAAGGTTATATACGATATCTATTTGGTTTTATCCGCTTGGTGGCGA
CATCAATCCTCAACTACAATTGGTATTATGACGTAGTTCGTAGTTACGTCACAAGTCACA
CAACAAAGAATTTATTATGAGCAAATAAACGAACTAATATGACGCAACAATAACTAACAA
TTTATCACGTGATCGTTTTATTTATTTTGTTTGTTATGTCATAACCACTTGGTGCTTAAA
AGGGAGCTTATGACGTATTAATGAACTTTAATTATTAAAACAATCTTGCTTATCGTGCTG
TGTTACGTCATAATACATGCATTAGCAATTACTTTGTTTTGTCATAATATGAATTATGTA
ATTATCGTGACGTTGTTTGTTTTAAAAACCCATTTATTATTACGTCATAATACTTTAGAT
GGTTGTGTATGTTACGTCATAATGTTAATTGTTGAATAAAAATGAAGAAACAAAGCCATG
AAGAAGGCGGTTTGTTATAAAACATTGTTGAAGGGATGGAATTAATTATGTTGTTAACGT
TTGAATTATTGATG
