- Region 'REG00000161'
Cis-regulatory Region
Name
Ci-TnI -987/-77
Short name
n/a
Region ID
REG00000161
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Brad Davidson (2007-04-19)
Annotator
Jonathan Luchino (2007-04-19)
Curator
Delphine Dauga (2010-04-07)
This sequence drives the entire Ci-TnI expression.
Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.
Coordinates in the paper : -800bp/-100bp
1,684,2111,685,120
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,684,211 / 1,685,120] on scaffold KhC11
This sequence was found scanning the JGI v1.0 assembly with the primers from the publication: TropIF986-TCAGCAGGACTTTACTTTTCGTGG,
TropIB76-GGTTGCATTCAGTTACTG
Show sequence
Length: 910
TCAGCAGGACTTTACTTTTCGTGGCGAGCAGCAAAAAGCGGATGCTAATTTCGATAATAT
TTGGATTTGTTTTACATTATTTAGAAAACGGGTTTCAAATTGATAAAACTGCATATTGGT
AATAATTAATGTGGAAAACTCTTAAGAGACAACTGAGTGGCATGCAGGGCATCGCAATAA
CAGCGTCTGCTGCGTGTCAACTCGACAGCGGGGTAGGTGCTTGTGACGTCATACTGCAGC
TGTTATCGCCTGAGCAGCAGTGTTCCCCGTGATTTTTTGCTGTGATTCAAATTTATTGAT
TACAAATATAAAAATTATATTATATTATACTTAATCAATGTAAAGTATTGATATAAGCAT
ATTTCGTTAATTTAACCGAAATTAGCTATAGTTTAAGCAGTTTCCAGAGGTTTACATTAG
TACGGCGGCAACACTCGTTCTATATTAAATCCAGACAACAAGAACTTCTTCTTCGTTTAG
TCCTTCGATATTCTATTTAAGGGAGCTTACAGCATCCATCCAACATCGGTAATCAAGAAT
CTGTTAACCTTGTTTAGTCACAGAGAAAGGTTCATGCATTTAAGAACCCCTTAGTGAATT
TAAAGAATTTTCTTGTAGAAAGGGCCGCATAGTGGCCATGAATACTATGGTTAACTATTA
GCTTAGTTGAGTTTATCATGCTCAATATTTTTATCATTTAGATTTTCTGAAGGGTTTAAA
ATTAAAAGCCTATTAAGCATATTTATTTAAATATAAGTTTATCCTCTCAGGGTTGTGATA
GTGATAACTTATCAGGATTTATAACTATAGCGCAATACTGAATTTATCAAGCTGATAAGA
CTACCAGTACCTGCGTAAAACCTTTAGGAAGTCTAAATAGATACTTACTCTTCAGTAACT
GAATGCAACC
