- Region 'REG00000159'
Cis-regulatory Region
Name
29h10 -903/-350
Short name
n/a
Region ID
REG00000159
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Brad Davidson (2007-04-19)
Annotator
Jonathan Luchino (2007-04-19)
Curator
Delphine Dauga (2010-04-07)
This sequence is the minimal enhancer which drives the entire 29h10 expression in endoderm and TVC, plus some ectopic tail muscle expression.
Be careful, coordinates in the paper are different from ANISEED coordinates. We took the KH transcript model as reference.
Coordinates in the paper : -900bp/-400bp
203,988204,540
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [203,988 / 204,540] on scaffold KhL116
This sequence was found scanning the JGI v1.0 assembly with the published primers: 29h10F910-CCTACTGTATTCCATGC,
29h10B376-TTCAACCCCAAACGCATCC
Show sequence
Length: 553
CCTACTGTATTCCATGCACACCTCAAAACTATTCAATATCGCGTGATATATAGTTGCGTT
AAAAGGTTTACAAAATGTGACAGACAATTTATTTCTATCAATGCAAGTCAGCACCCTAGA
TCATCGCTTCTCTAGTCGCTGTAAATGGACTAAGTCAACACAGGGCTTTTCACTGTTTAA
AATTCCCGCGCCTGTATTTGTGGGGCGCGAACTAGGTGAGAAGATCATGTAAGAACAAAC
TGCGAAATTCTATCTCACGTTGGGGTATATAACTCAACAACTGCTGCAAAAATGTTATTT
TAAGGTCTGTATAAGTAAGCGAAGGCTTACCAATTAAGCACCCAAGCGTATAGTAGGTGG
TCTCTTGGATTCTCAGTGGCAATTCGGGACACATGAGTAATTAAATGATGCAAAAAATAT
TATTGTAAAGGGTGCAATAATGGATTTTTTAGTTGGTTACAGATTGACTCGTTGCACGTT
TTGAAAAGCCAAATGCGCCGCTCTCGGAACTGTCAGAGTAAATTAGACTAAAACGGATGC
GTTTGGGGTTGAA
