Cis-regulatory Region
Name
Ci-Sna -68/codon 15
Short name
n/a
Region ID
REG00000075
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Albert Erives (2006-10-01)
Annotator
Patrick Lemaire (2007-11-06)
Curator
Delphine Dauga (2010-02-26)
The sequence below goes from -68 bp upstream the start of cDNA AF002987 to 1,3 kb downstream (corresponding to the middle of exon 2). No activity detected.
This region was named -68bp in the paper (Erives et al 1998).
Modification of Ci-Sna -158/codon 15 by deletion
- Ci-Sna -3200/codon 15 REG00000051 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3200/codon 15 delta 262bp REG00000052 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3000/-68 REG00000053 [ regulatory_region (complex_region) ]
- Ci-Sna -2200/codon 15 REG00000054 [ regulatory_region (extended_promoter) ]
- Ci-Sna -1700/-157 REG00000055 [ regulatory_region (complex_region) ]
- Ci-Sna -650/87 REG00000058 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7 mutated REG00000059 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6 mutated REG00000060 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6/E5 mutated REG00000061 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6 mutated REG00000062 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6/E5 mutated REG00000063 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E5 mutated REG00000064 [ regulatory_region (extended_promoter) ]
- Ci-Sna -444/87 REG00000069 [ regulatory_region (extended_promoter) ]
- Ci-Sna -672/-168 REG00000065 [ regulatory_region (enhancer) ]
- Ci-Sna -618/-356 REG00000066 [ regulatory_region (enhancer) ]
- Ci-Sna -3200/codon 15 delta 1.5kb REG00000214 [ regulatory_region (extended_promoter) ]
5,679,2155,680,582
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,679,215 / 5,680,582] on scaffold KhC3
JGI version 1.0 version.
Show sequence
Length: 1,368
AAGCTTAGCTATATTTGAAGGATTATGTATACTTATTTCATTAGAGCAATATTTTTTTTT
TTATTTTAGACTTTTGGTACATATTCAAAATATCAAAATTCTCACTGTGAAATATATTAC
TGTGATTACATCATGACCTCCGTCGAGCCCATGCTTTATCAAGGCAAGCACGCCGTTCAG
AAAAATGAAGGTATATATGCAGTCCTATTTATATTATAATTCATCGCGGCAATTGTTTCT
CTTATAAAAATCAAACGCGATCATTTTAAATGTTGTAAACAGAGCAGATGCCTTTGTAAA
TATGCATCATCTTGTACCGAGAATCCAGCAGAATTTTCCATGAGACTTTCGTTCACGTAA
AAGTTAAATTATTTTCGGAGGTTATTTGCGCACGGCGCGGTGTTGGAACTTTTCGCTAAT
CCGACTGTTTGTTTCCGCCTAAATTAATCACAAGTAACAGTTGCGATAAAACAAGGAAAC
GACTGGATCTCCCGCTGTTATAGGATGCCACCTCGCACGTCAAACCCCACACATACCGTA
ACTTTTACCTAAATAATGGAAATGCAATTATTTAATTACCTGTGGAAGAATCCGGACTAA
GCCGAGATTGCCTAATATAGTTAGACAAGGTCCGGTCACTCGGGCTAAACATTCAAACAG
GTGGTGCCTAAAATAGATGCGAGCTGGTACCAAGTGTTTTGCTCGCACCGTTCCTCCCAT
GGGTGACTGGCTGGCTTTAAGGATGGAACGCTACCGATATAAGTTTGACGTAATCTCGGT
CTGGATGAAAGCGTTGACAGCACTACCTGTTTGCACACTCGGCACAACTGCTGCTTATGG
AAGTGAACTGCGGTTTCCCGATATGGAAACCGTATGGCTCAATAACAAATTATTTACGGC
CCTCAGGACAGCCCGCCATGCAGTCTGCACCATATTTTTAATCCTGGCTTTTGCCAAGAC
CAAATATTACAAAGTTAAATCTTCTTTAGGCGAATCTACCCGTCCTTGCACTTTGAGTGG
AGATGACAGTTTTTACTGCAGCGGCGAATCAACAAATTCGACGTCATCTCCCACGTCATC
CATTACGTCATCGCGTTCATGTGGACCTGACAGCGACGAAGGTTTTCCGAGACAGGATGA
CCTGGATTTGCGTGACAAAGCCAGCAAAAACTTGCAACATAGCGTTGAGCTTTTTTGCCC
TATTAAGAGCAAGTCAGTTGATCATGATAACGATTTAATGCCTATGGATCTCTCGTGCAA
AAAGAGAACTTTCCCAAAACAAAATTGCAAAACTGCTAGCATGCCTAAAACGAGCCCAAC
CATAAAATCAGAACCGATTGATGACTATCCAGCTTCACTTACACGCAA
