- EST 'AHC0AAA221YP22_RM1' >
- EST 'AHC0AAA231YP24_RM1' >
- Molecular Tool 'FOG-MO1 (Lemaire Lab)' >
- Transcript 'Moocci.CG.ELv1_2.S60...' >
- Region 'REG00000074'
Cis-regulatory Region
Name
Ci-Sna -158/codon 15
Short name
n/a
Region ID
REG00000074
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Albert Erives (2006-10-01)
Annotator
Patrick Lemaire (2007-11-06)
Curator
Delphine Dauga (2010-02-26)
The sequence below goes from -158 upstream of start of cDNA AF002987 to codon 15 in Sna.
This region was named -158bp in the paper (Erives et al 1998).
Modification of Ci-Sna -321/codon 15 by deletion
- Ci-Sna -3200/codon 15 REG00000051 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3200/codon 15 delta 262bp REG00000052 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3000/-68 REG00000053 [ regulatory_region (complex_region) ]
- Ci-Sna -2200/codon 15 REG00000054 [ regulatory_region (extended_promoter) ]
- Ci-Sna -1700/-157 REG00000055 [ regulatory_region (complex_region) ]
- Ci-Sna -650/87 REG00000058 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7 mutated REG00000059 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6 mutated REG00000060 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6/E5 mutated REG00000061 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6 mutated REG00000062 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6/E5 mutated REG00000063 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E5 mutated REG00000064 [ regulatory_region (extended_promoter) ]
- Ci-Sna -444/87 REG00000069 [ regulatory_region (extended_promoter) ]
- Ci-Sna -672/-168 REG00000065 [ regulatory_region (enhancer) ]
- Ci-Sna -618/-356 REG00000066 [ regulatory_region (enhancer) ]
- Ci-Sna -3200/codon 15 delta 1.5kb REG00000214 [ regulatory_region (extended_promoter) ]
5,679,1255,680,582
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,679,125 / 5,680,582] on scaffold KhC3
JGI version 1.0 version of the region's sequence.
Show sequence
Length: 1,458
GAATTCTAAAGTGATTATATTTAGAAATGGGCTATCAGTGCTTGATTACTGTTGCAGGGT
TATTTAAAAATGCAGTCGAACAGTCTAAGAAAGCTTAGCTATATTTGAAGGATTATGTAT
ACTTATTTCATTAGAGCAATATTTTTTTTTTTATTTTAGACTTTTGGTACATATTCAAAA
TATCAAAATTCTCACTGTGAAATATATTACTGTGATTACATCATGACCTCCGTCGAGCCC
ATGCTTTATCAAGGCAAGCACGCCGTTCAGAAAAATGAAGGTATATATGCAGTCCTATTT
ATATTATAATTCATCGCGGCAATTGTTTCTCTTATAAAAATCAAACGCGATCATTTTAAA
TGTTGTAAACAGAGCAGATGCCTTTGTAAATATGCATCATCTTGTACCGAGAATCCAGCA
GAATTTTCCATGAGACTTTCGTTCACGTAAAAGTTAAATTATTTTCGGAGGTTATTTGCG
CACGGCGCGGTGTTGGAACTTTTCGCTAATCCGACTGTTTGTTTCCGCCTAAATTAATCA
CAAGTAACAGTTGCGATAAAACAAGGAAACGACTGGATCTCCCGCTGTTATAGGATGCCA
CCTCGCACGTCAAACCCCACACATACCGTAACTTTTACCTAAATAATGGAAATGCAATTA
TTTAATTACCTGTGGAAGAATCCGGACTAAGCCGAGATTGCCTAATATAGTTAGACAAGG
TCCGGTCACTCGGGCTAAACATTCAAACAGGTGGTGCCTAAAATAGATGCGAGCTGGTAC
CAAGTGTTTTGCTCGCACCGTTCCTCCCATGGGTGACTGGCTGGCTTTAAGGATGGAACG
CTACCGATATAAGTTTGACGTAATCTCGGTCTGGATGAAAGCGTTGACAGCACTACCTGT
TTGCACACTCGGCACAACTGCTGCTTATGGAAGTGAACTGCGGTTTCCCGATATGGAAAC
CGTATGGCTCAATAACAAATTATTTACGGCCCTCAGGACAGCCCGCCATGCAGTCTGCAC
CATATTTTTAATCCTGGCTTTTGCCAAGACCAAATATTACAAAGTTAAATCTTCTTTAGG
CGAATCTACCCGTCCTTGCACTTTGAGTGGAGATGACAGTTTTTACTGCAGCGGCGAATC
AACAAATTCGACGTCATCTCCCACGTCATCCATTACGTCATCGCGTTCATGTGGACCTGA
CAGCGACGAAGGTTTTCCGAGACAGGATGACCTGGATTTGCGTGACAAAGCCAGCAAAAA
CTTGCAACATAGCGTTGAGCTTTTTTGCCCTATTAAGAGCAAGTCAGTTGATCATGATAA
CGATTTAATGCCTATGGATCTCTCGTGCAAAAAGAGAACTTTCCCAAAACAAAATTGCAA
AACTGCTAGCATGCCTAAAACGAGCCCAACCATAAAATCAGAACCGATTGATGACTATCC
AGCTTCACTTACACGCAA
