- Clone 'cicl054f24' >
- Transcript 'Moocul.CG.ELv1_2.S54...' >
- Transcript 'KH2012:KH.C1.1084.v1...' >
- Clone 'ciad010i24' >
- Region 'REG00000073'
Cis-regulatory Region
Name
Ci-Sna -321/codon 15
Short name
n/a
Region ID
REG00000073
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Albert Erives (2006-10-01)
Annotator
Patrick Lemaire (2007-11-06)
Curator
Delphine Dauga (2010-02-26)
The sequence below goes from -321bp upstream of start of cDNA AF002987 and 1,3 kb downstream (corresponding to the middle of exon 2). It has no transcriptional activity.
This region was named -321bp in the paper (Erives et al 1998).
Modification of Ci-Sna -465/codon 15 by deletion
- Ci-Sna -3200/codon 15 REG00000051 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3200/codon 15 delta 262bp REG00000052 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3000/-68 REG00000053 [ regulatory_region (complex_region) ]
- Ci-Sna -2200/codon 15 REG00000054 [ regulatory_region (extended_promoter) ]
- Ci-Sna -1700/-157 REG00000055 [ regulatory_region (complex_region) ]
- Ci-Sna -650/87 REG00000058 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7 mutated REG00000059 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6 mutated REG00000060 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6/E5 mutated REG00000061 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6 mutated REG00000062 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6/E5 mutated REG00000063 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E5 mutated REG00000064 [ regulatory_region (extended_promoter) ]
- Ci-Sna -444/87 REG00000069 [ regulatory_region (extended_promoter) ]
- Ci-Sna -672/-168 REG00000065 [ regulatory_region (enhancer) ]
- Ci-Sna -618/-356 REG00000066 [ regulatory_region (enhancer) ]
- Ci-Sna -3200/codon 15 delta 1.5kb REG00000214 [ regulatory_region (extended_promoter) ]
5,678,9625,680,582
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | bHLH | n/a | CATTTG | [5,679,045 / 5,679,050] | |
| 2 | bHLH | n/a | CAAATG | [5,679,075 / 5,679,080] |
Aniseed Coordinates: [5,678,962 / 5,680,582] on scaffold KhC3
JGI version 1.0 assembly version of the sequence. E5 is absent.
Show sequence
Length: 1,621
CCGAGTTGAGTGGGAAATCATATTCTGGTTGCTTCGCTTATAGAGCTAGCTCACTAGAGA
CTAGAGTGTTGTGAATGATGAATCATTTGAATTAAGCATTTTGTTTAGTTGATCAAATGA
GTTTCAGTTTGATGTTCAGGACTGCTAAGTAATGCAGTGAAAGGAATTCTAAAGTGATTA
TATTTAGAAATGGGCTATCAGTGCTTGATTACTGTTGCAGGGTTATTTAAAAATGCAGTC
GAACAGTCTAAGAAAGCTTAGCTATATTTGAAGGATTATGTATACTTATTTCATTAGAGC
AATATTTTTTTTTTTATTTTAGACTTTTGGTACATATTCAAAATATCAAAATTCTCACTG
TGAAATATATTACTGTGATTACATCATGACCTCCGTCGAGCCCATGCTTTATCAAGGCAA
GCACGCCGTTCAGAAAAATGAAGGTATATATGCAGTCCTATTTATATTATAATTCATCGC
GGCAATTGTTTCTCTTATAAAAATCAAACGCGATCATTTTAAATGTTGTAAACAGAGCAG
ATGCCTTTGTAAATATGCATCATCTTGTACCGAGAATCCAGCAGAATTTTCCATGAGACT
TTCGTTCACGTAAAAGTTAAATTATTTTCGGAGGTTATTTGCGCACGGCGCGGTGTTGGA
ACTTTTCGCTAATCCGACTGTTTGTTTCCGCCTAAATTAATCACAAGTAACAGTTGCGAT
AAAACAAGGAAACGACTGGATCTCCCGCTGTTATAGGATGCCACCTCGCACGTCAAACCC
CACACATACCGTAACTTTTACCTAAATAATGGAAATGCAATTATTTAATTACCTGTGGAA
GAATCCGGACTAAGCCGAGATTGCCTAATATAGTTAGACAAGGTCCGGTCACTCGGGCTA
AACATTCAAACAGGTGGTGCCTAAAATAGATGCGAGCTGGTACCAAGTGTTTTGCTCGCA
CCGTTCCTCCCATGGGTGACTGGCTGGCTTTAAGGATGGAACGCTACCGATATAAGTTTG
ACGTAATCTCGGTCTGGATGAAAGCGTTGACAGCACTACCTGTTTGCACACTCGGCACAA
CTGCTGCTTATGGAAGTGAACTGCGGTTTCCCGATATGGAAACCGTATGGCTCAATAACA
AATTATTTACGGCCCTCAGGACAGCCCGCCATGCAGTCTGCACCATATTTTTAATCCTGG
CTTTTGCCAAGACCAAATATTACAAAGTTAAATCTTCTTTAGGCGAATCTACCCGTCCTT
GCACTTTGAGTGGAGATGACAGTTTTTACTGCAGCGGCGAATCAACAAATTCGACGTCAT
CTCCCACGTCATCCATTACGTCATCGCGTTCATGTGGACCTGACAGCGACGAAGGTTTTC
CGAGACAGGATGACCTGGATTTGCGTGACAAAGCCAGCAAAAACTTGCAACATAGCGTTG
AGCTTTTTTGCCCTATTAAGAGCAAGTCAGTTGATCATGATAACGATTTAATGCCTATGG
ATCTCTCGTGCAAAAAGAGAACTTTCCCAAAACAAAATTGCAAAACTGCTAGCATGCCTA
AAACGAGCCCAACCATAAAATCAGAACCGATTGATGACTATCCAGCTTCACTTACACGCA
A
