- Transcript 'KH2012:KH.C7.568.v1....' >
- Molecular Tool 'Hr-FoxA mRNA (Kumano 2066)' >
- Molecular Tool 'FOG::Nodal' >
- Region 'REG00001282' >
- Region 'REG00000066'
Cis-regulatory Region
Name
Ci-Sna -618/-356
Short name
n/a
Region ID
REG00000066
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Levine Team (2006-10-01)
Annotator
Delphine Dauga (2010-04-13)
Curator
Delphine Dauga (2011-11-14)
Minimal Ci-Sna enhancer active in 2 derivatives of B4.1: mesenchyme and tail muscles. Enhancer called 262bp ci-Sna in Erives et al. dev biol 2000.
Modification of Ci-Sna -3200/codon 15 by deletion
- Ci-Sna -3200/codon 15 REG00000051 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3200/codon 15 delta 262bp REG00000052 [ regulatory_region (extended_promoter) ]
- Ci-Sna -3000/-68 REG00000053 [ regulatory_region (complex_region) ]
- Ci-Sna -2200/codon 15 REG00000054 [ regulatory_region (extended_promoter) ]
- Ci-Sna -1700/-157 REG00000055 [ regulatory_region (complex_region) ]
- Ci-Sna -650/87 REG00000058 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7 mutated REG00000059 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6 mutated REG00000060 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E7/E6/E5 mutated REG00000061 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6 mutated REG00000062 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E6/E5 mutated REG00000063 [ regulatory_region (extended_promoter) ]
- Ci-Sna -650/87 E5 mutated REG00000064 [ regulatory_region (extended_promoter) ]
- Ci-Sna -444/87 REG00000069 [ regulatory_region (extended_promoter) ]
- Ci-Sna -672/-168 REG00000065 [ regulatory_region (enhancer) ]
- Ci-Sna -618/-356 REG00000066 [ regulatory_region (enhancer) ]
- Ci-Sna -3200/codon 15 delta 1.5kb REG00000214 [ regulatory_region (extended_promoter) ]
5,678,6715,678,928
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment | |
|---|---|---|---|---|---|
| 1 | bHLH | n/a | CAACTG | [5,678,683 / 5,678,688] | |
| 2 | T-Box | n/a | GATCCCACCT | [5,678,737 / 5,678,746] | |
| 3 | bHLH | n/a | CAACTG | [5,678,785 / 5,678,790] | |
| 4 | T-Box | n/a | TTTGGCACCT | [5,678,873 / 5,678,882] | |
| 5 | bHLH | n/a | CAACTG | [5,678,901 / 5,678,906] |
Aniseed Coordinates: [5,678,671 / 5,678,928] on scaffold KhC3
Sequence derived from AF302999, which differs slightly from the JGI v1.0 sequence.
Show sequence
Length: 262
AATCTGTGGCGACAACTGTGGTCTGATTTACAGGCGAGTTGGACGGAGTTGACAGGTCGC
GAAAGCGATCCCACCTTCGTGTCTGGGTTTCGAGGTGCCGCCCGTCGTGCAGTACAACTG
TGCGGTCAAGTTGAGAGCAAGAAGACACCACAGCGCGCTTTGAAGCGTCCAAGCCCGCCC
GCTGAGCAGGGCGGATAGCTCGTTTGGCACCTCGTCCTGGCATCGTCCCGCAACTGTCAA
CCTTCTTCGTTACAAACGTCCT
