Login
Help

CIS-REGULATION

Submit your Data

  1. Region 'REG00000032'

Cis-regulatory Region

Name

Ci-vGAT -2668/-1

Short name

n/a

Region ID

REG00000032

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2007-01-24)

Annotator

Delphine Dauga (2010-01-15)

Curator

Delphine Dauga (2010-02-26)

View position in WashU

Description

Data from DBTGR (Sierro et al., 2005). Region from -2668 to -1 from the start codon allows expression in the brain vesicle and the anterior part of the nerve cord. Reference for promoter: Yoshida, R., Sakurai, D., Horie, T., Kawakami, I., Tsuda, M., Kusakabe, T. 2004. Identification of neuron-specific promoters in Ciona intestinalis. Genesis (39): 130-140.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C2.526 (SLC32A1; SLC36A1; SLC36A2)

Construct(s) made to test this region

CONS00000181: pvGAT -2668/-1::EGFP

CONS00001147: Ci-VGAT -2668/-1

CONS00001148: Ci-VGAT Kaede

CONS00001154: Ci-VGAT -2668/-1 Kaede

Show in situ data
Overview of functional TF binding sites in this region

4,283,1104,285,777

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,283,110 / 4,285,777] on scaffold KhC2

This sequence was found using a blast on the JGI V1.0.

Show sequence

Length: 2,668

ACTATATGTTACAAAATTTCTTTTATTTAAACAACCAGATTGCTTCTGTCGAAGTTTCAT
CAAGAAGAAAGAAGCAAGTCTTTGTAGAACGTAGAGAGGAACCACAGGTAAAATAATAGA
GCGGAGAATTTCTCTTTTTGTAAGCCATGTGGTACAGGCCGTGAGGTATGTCGTTTTCGA
CACTTCACAACGAGCGTGACTCGATTCGCAAAGAATCACATTTCAAAGGTTTTTTAATAG
GCATGTTTGCAATTATATGGTTGGGAGGATAATGTAGAGCCCTAAATGTTACATTATCGA
AGGATGTAACGCTGCTGTGGTATTTGTATGATCATTTTATTACCGGTACGAAATTTACAT
TAGCGTGCATGTGTTCCTAATTAGTTTGGGTCCAGAATTCGTAGCGTTCCGCAACGAAGA
CTTATTACATGAAGCTTATAACCGGGAAAGTTGATTGATTGCACCAGGTGCATCTATATT
GGGTTTCAGTGAAGGACTTTTAAGTCTCAATTATTCATCGATTTCCTGTTTATTCCGCTC
CATACCTTCTACTAGCCGCAATAACCCAACGATCAAACGACGTTGTCGGTCCGCCAAGCT
TAAAATTAGTGTAGAAAGAATACCAGCGCCGTTCGTGTTTTGCGATGTTTTATCTTGATT
TCCGAATTTATATGTGGCGTAAGACATTGGTCAGAAAAAGGCAATCCTAAAACATTTTTG
TGTTAACGTCCTCCCCACTATAGCGTCATCTCTATTTTGTTATATAAAAGCGGCCATTTT
TTTTCAACCCAATACTACGACTTCGGCAACCAAAGCAGAAAGTTATCCAATATACTGGTT
GCGGTCTTCATAACGTCTTATAAGTAGTCGCCGAACTCTTACAGGACAAATAATTATTCT
GTATTGTTTCAGACCGACCCATCCATAATCACATCAGCCGCAAAGTACTTAGCACGAATA
TCTGAAGAGTGAAAATCGTATGTATTTTATCGCTAGTTTGTATAGTTTATCATGAATTTA
AACTACGTTTCACTCGCCGTTGATTTTATGATCGCATGATGAAAATATAGTCGTCAAAAA
TTTTTCATGTGAAAAATATATGTTACGAAATACGAATGAGTTACTACAATGTTATTCCGT
GAGCTTTAATAATCCCGTGCGATCCCCTATAATCTATATCATCAGGCTTGCAGGATAATA
CAGGTTTGGAATGAACGAAAATCGATCGATTGGCTACGTAATAATCCCATGTCTTTCTAT
TTCACGCTTAAATGGGCAATGTTACGCCAGGGGAACCTTTAAAACGATAGCCAATCAGTG
CTTAACGCACCGCAGCTATGCAATCGCTATTAGTGCCCCATCTTAAGCAACAATTCCGAT
TGATTCGCAATTAAACACCGATTTGTTTTATTGGTTCTAAATGAAAGTTACCACTGGAGA
AAAAATGTATGGCCATGTAGTCTATACTGCTTAAAAAGCGCAGCTGAATCGGCTGCAGTT
TGATTTCGTTTGTGTTTCGCAGTAGAAAAAACGTTGTACAAGAAATTCAGTAATTCCGGA
AAAGACTTTTAGTGAATCTGCAGCGCATTCCAAATTATTGTAGGTGAATCGGCTGCAGTT
TGATTTCGCTTGATTGTCCATGACACGTAGTTTAAATAAGTTGCCAAGGATCGATTCCGG
AAAAAAAAACATTTGGTGATTCTGCAGCGCACTACCAAATCATTTATTAGAAATTTTACA
TGCGCCTGTTTTGAAAATACAATATTTTCTTGAATCGATACGCAAGGCAGGTTCTATAAA
TAATTTTGCAAAATACCCAAGCGATGAATGAAGTAATTACTGCCTGGAATGATTTACAGA
ATCCTGTTACAGTCAGAGCATTTCTTTAGAAAAGCAGTCCGTTGATGTTGTCAGTCGTAA
TTACGGAGCTTTTTGGCCCAAGACATTTTCATCAGCGGTATTCGGAGAACATGGTTCGCC
TCTCTAGCTGTCAACGCACGATTCCCTGGAGATAAGTGCGTGGCTCTACGCCTCTTGTCA
ATGTCGCTATAAGTGGGCTAAATGAGCGCTTTATTGGGGTATCTGCGGTCGCAGAGATTC
ACCTGCATTTCGACGCATTCGCGGACCTCCAGCTCGCAGCGTTGATACCGATCGTCCCTG
GTGCGGATTAGCGTAGGCAAGAATATGCCTTGCTTATTGGTCGCTCAGGCGTGTGATCCT
GCAATCATACGATACGAAGACATTGATCGACCAATCTCAGGCTATATTAAACAATATTAA
ACATACTGCATTTATAATAGTTCAGTCCAGGCTGTATATTGTGCTAAATAGAACCAAACT
TAAACAGGTTTTTATTGAAAAGGTAGCCCAGTTCGTGCGATAAAGGCTTAGAAAAGACAT
AGTCTAAGAAATATTTACTTCAACCAGACCTGCGTGGTGGAATAAAAGGTTATTGGAATA
AAAATAAGAATAGGTACCTTCTGTTAGTATGGCTGCAATATTAGACAAAGTTCGTTCAAG
AATTGTGTCATTGGGACCAACAAGTGAAGAGAAATTCTCCTTTGCCAAGTCCAGCGACCA
ACCCCACCCATCAGGAAGTGGGTGCCAGGGCGACGGCGCCACCAACCCAAGTTCCAACAG
CGTATCGCATCCGGAACGTTCGACCTCA

Reference(s)

Nishitsuji et al. (2012). Cell lineage and cis-regulation for a unique GABAergic/glycinergic neuron type in the larval nerve cord of the ascidian Ciona intestinalis. Dev. Growth Differ. 54(2):177-86

Yoshida et al. (2004). Identification of neuron-specific promoters in Ciona intestinalis. Genesis 39(2):130-40

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5

Back to Top