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CIS-REGULATION

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  1. Region 'REG00000026'

Cis-regulatory Region

Name

Ci-Dlla -1846/-227

Short name

n/a

Region ID

REG00000026

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Naoe Harafujo (2007-01-24)

Annotator

Jonathan Luchino (2007-07-20)

Curator

Delphine Dauga (2010-02-24)

View position in WashU

Description

The region from -1846 to -227 (from TSS) is sufficient for expression (Harafuji 2002).

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C7.346 (DLX1; DLX5; DLX6)

Construct(s) made to test this region

CONS00000176: pDlla -1846/-227 pfkh::LacZ

Show in situ data
Overview of functional TF binding sites in this region

622,180623,799

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [622,180 / 623,799] on scaffold KhC7

This sequence was found using a blast on the JGI site.

Show sequence

Length: 1,620

CTTGTCTCAATTTGAACGGAGATATGAGGACAGTTATTATAGTTATTCCGAAATGGCTTT
CATAACAAAAATCACAATTGTCAAAATATATGTTCCGAAATGGTAGTAACGATTATTCCG
CTTTTCCTTTAAAACGATTTACCCAAAATAAAAACGAGGCTTTATGAAAAACCTTTTTTG
CTATAGTTTTGTTGACCATTTTGGTTGTTTTGTTGAGAAATCAAATATGCAAGGCCGCGA
GTCCATATACTTCGGCGCCGCCACAGTCATCAAACGCGGCATTAAAATTTCATATGCGAC
TGCGTACACTGTACACTTTCTCATCGCACTCTGTTGTCACAAAACACCGCTGCTAAATAC
CGTTTGCTCCATTTTATGACCACTTCGCTTCAGATTTGCAATGAATATTAATTCACAAAA
AAAATCGCAAAGCCGTGCTGTCTCGTACATCGTATATTCGATTATTTTAGTGAGATAAAT
GTGAAACCAGAGACAGGAAATTCGTTTAGGTTTATAGCACATATTTTTTTGTTGGTAAAA
TTACCTTAGATACCTAAACAGTTAAACACACGCTATTTATTCAGACTTTTTCAAAAATAA
TTTTTTTGCGTGAAGGGCCCTTTGTACAACATGATTCTTTTAACTAAACGCAACATTACT
TTTAAATTTCTTCCAAATGTTACGTAAACTAAACAAAGTCGTATAAATTATTAAACGCTA
TCACTTTATTGCACTTTAAATATGACAAACTTGTGCAAAGAGCTTCTGTACATGAATATA
TGCATGTGTGCACAACGTACAAAATGGCCGTGGGAAATGCATGAGCAAGTGCCGTTGCAC
AGAATACGAAATGAAATACCTATCACCACGTGTTTTAAAATGCAATAATGAGAAGGCTGT
TATGTTATGTTTTATTTTGTTGGTCTGTTCAGCTAATGTCTGCGTATTTAATATCAGCTG
CACAGTAGGGTGGGGGCAAGGTGGGACGTCTCTAGCACATAATATTCAAATATTCTGATT
GTGTTTTAAACAAATAACAACGGTCTATGCGAGTCGTAAAGACACAGTTTTATAATTATT
TGAAGTTCTTTGTTTACTACCAAATGGGACGAGGAATTATACCGATAAGGTGTACCATCT
TACCCCACTGTAAACGATATTGATTTTTAGTGGTTTGAAAAATTTAATTTACGTTATAAT
TCATTTAGCCTTGCATGAAATTTTTAACATTTATGATTATTTTTCCTAAAACGTACTTTA
TTTGTTGTCATTAGAAAAGCATTGAAGCTTTTATAGGCGAGAAATGGAATTACAATTAAC
GCAAACCAAGCGAATTTACCGAGTTACAAAATCCGCTATCGTTTTTCGCTTTTCCGAGGT
CGTTCAAATCAGGTGACGAGGAAAGCTCAAAATTACGGGCTAGGGTTTCAGAAATCGCGG
CGGGCGCGAAAAAGTCGCGGTCCGGTTTCTGCCCGCCGCGAAGAGACGCGACGACAATCG
AAAAAGCGCACTGCCGCGGCCGTAACAATCAGTAATTATGACGCAGGTGGAATAGCAACG
GCAAGGCATTGAAGCAAATGAAAGGGTCTATGATCATTTTAATTGGTTTGCAATATCCGA

Reference(s)

Harafuji et al. (2002). Genome-wide identification of tissue-specific enhancers in the Ciona tadpole. Proc. Natl. Acad. Sci. U.S.A. 99(10):6802-5

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