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CIS-REGULATION

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  1. Region 'REG00000002'

Cis-regulatory Region

Name

bpFOG

Short name

n/a

Region ID

REG00000002

Status

Not Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(RNApol_II_core_promoter)

Author

Clément Lamy (2007-03-28)

Annotator

Patrick Lemaire (2007-06-05)

Curator

Patrick Lemaire (2007-12-02)


Description

This is the strong basal promoter of the Ci-Friend of gata gene. It is able to support expression in animal territories from 16-cell stage.

Construct(s) made to test this region

CONS00000175: CONS00000175

Overview of functional TF binding sites in this region

1,827,5721,827,789

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,827,572 / 1,827,789] on scaffold KhC10

Show sequence

Length: 218

AAGCTTCGTGTATTGTACCGGCCCATTGTCAATCATGCAAACTTGATATTATATTGACAA
GAGAAGAAGGCAGTTTAAATTAAAACTCTAAAGTAGAGAGACATTAATCTCAGCTGACAA
GGCAGGTGGTCACAGTAAGTTCATTTAAATAGTTGGCCAACAATAGCCTTTCCAAGAAAG
TATTTTTGTTCCAGGTCTATACAAAAATAACACACATA