- Transcript 'Phmamm.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S493.g09409.02.t
Possible name(s)
CHRD; CHRDL1; CHRDL2
Gene model
Location
S493 [100,068 / 106,913]
Amino acid sequence
Length: 880
>Phmamm.CG.MTP2014.S493.g09409.02.p
MASPFQVGRSKVMCHDVRKDCEPVTCKNAKVPRGECCKVCPDDVDKEIEKSISSKAVEGD
LSARVVSILGDKAINDEDSKSSGDSKTKHFVSLLTSASGGALMRATFTLHRGNLHFTLHH
PFSERPNTVELLNHDDTILYDHVSGESPKPQQSIVCGVWRNLPKNVLHSLDRRALQLKVT
FDTPGSDSAENATSTGRIIKHRALSKETFSSLLSTNSNPLDGSRGALVMMTLGRQRFTRL
HFAVVFRKNSSLSNENKVALKLFNENGIVLRKTEKSLSVDENEFGDVWPTNSEILRRLGE
GTLHLELTVGADGSDSFTGNVTARVTCNLLQVVLSGNGCAQKASTGAAGSAIVVVNPDNT
VSYKMSLVGLSSAVTSVSFLGDYRKKRTRVIADVTSQYENGKAEGRLETLNGKELHLLLS
EFVRVRIETEQSNSGELGGKVTSFLFGGHLARYRGLPTPLAGALVRPPVFTGSAGHAWLE
LNDQCHLYYEIVVDGLSTHTDSSVAAHLHGLAEISGSEINHKQLLKGFYGSEARGVLQVM
NSALYEQLDRGTAFIQIATKRNPQGEIRGRIHIPNQCSQVGGNTKVNSQDAILPENNLKV
ASVAPPTEITTRFGDLHAVVHDGAAPELTQRRLEMDPMSCYSEGRWRADGSQWSPSYDQR
CTKCVCEGGSVVCDPIYCPRLTCSRPVALENECCPVCNDGFGSIPAKEEGLPIGSLFQST
LDLHRQNIGGLPQVKEVTEGCYDENDGKMHSYGSSWTPYFPMFGLVACLNCTCRMSGEIT
CGKVTCPPVTCKNPRRESRNQCCKTCPEETTGFSTRSRDPRMQDDSSVGMCSFGRDLYAR
GDKWSVTVPTMIKRDCVECECLYSATGGLKYKCKWKCARN
Nucleotide sequence
Length: 2,643
>Phmamm.CG.MTP2014.S493.g09409.02.t
ATGGCGTCACCGTTTCAAGTGGGAAGGTCAAAGGTGATGTGTCATGACGTCAGAAAGGAT
TGCGAACCAGTGACGTGTAAAAACGCAAAAGTCCCAAGAGGAGAATGTTGCAAAGTTTGT
CCTGACGATGTAGATAAAGAGATCGAGAAAAGCATTTCATCCAAAGCGGTAGAAGGAGAT
CTTTCTGCTCGCGTTGTCTCGATTTTAGGCGACAAAGCAATTAATGACGAGGATTCGAAA
TCAAGCGGAGATTCGAAAACTAAACATTTCGTGTCCTTGCTTACCAGCGCCTCTGGTGGT
GCGTTGATGAGAGCAACTTTTACGCTTCACAGAGGAAATTTGCATTTCACTCTCCATCAT
CCATTCTCCGAGCGACCAAACACGGTGGAGTTACTTAACCATGACGACACGATTTTGTAC
GATCACGTGAGCGGGGAATCACCTAAACCGCAACAGTCGATCGTGTGTGGGGTTTGGCGA
AATCTCCCGAAAAACGTCTTGCACTCATTGGATCGACGCGCTTTGCAGTTGAAAGTGACT
TTTGACACGCCCGGTAGTGATTCTGCCGAGAATGCAACCAGCACAGGGCGTATCATAAAA
CACAGAGCACTAAGCAAAGAAACTTTTAGTTCCCTTCTTTCCACAAACTCGAATCCGCTA
GATGGCAGCAGAGGCGCCCTTGTGATGATGACGTTGGGAAGACAAAGATTTACTCGACTT
CATTTCGCTGTAGTTTTCAGGAAAAACTCGAGTCTATCCAATGAGAACAAGGTTGCACTG
AAGCTGTTCAACGAAAATGGAATTGTGTTGCGAAAGACAGAGAAAAGTTTGTCCGTGGAT
GAAAACGAGTTCGGGGATGTTTGGCCGACCAATTCCGAAATTCTCCGAAGGTTAGGAGAA
GGGACACTTCACTTGGAACTCACTGTCGGCGCCGATGGAAGTGATTCCTTCACCGGAAAC
GTCACCGCCAGAGTGACATGTAACCTGCTTCAAGTTGTGTTGTCTGGCAACGGATGTGCG
CAGAAGGCTAGCACGGGAGCGGCGGGATCAGCAATTGTTGTCGTCAACCCTGATAACACC
GTTTCATATAAGATGTCGCTGGTGGGTTTGTCCAGCGCTGTGACGTCAGTATCATTTTTG
GGGGATTACCGCAAAAAGCGAACGCGCGTTATCGCCGATGTGACGTCACAATACGAGAAC
GGAAAGGCCGAAGGAAGATTAGAAACACTGAACGGTAAAGAGCTTCACTTGCTGTTGAGC
GAATTTGTTCGAGTGAGAATTGAAACCGAACAAAGCAACAGTGGGGAGTTGGGCGGGAAA
GTGACGTCATTCTTGTTCGGGGGGCATCTCGCCCGTTACAGAGGTTTACCAACTCCACTA
GCCGGTGCTCTCGTTCGCCCTCCAGTGTTCACAGGATCAGCCGGTCACGCTTGGCTGGAG
CTGAACGATCAGTGTCATCTGTATTACGAAATTGTTGTCGACGGTTTGAGCACTCACACC
GATTCAAGCGTTGCTGCTCATCTCCACGGCCTGGCCGAGATTTCTGGAAGCGAGATTAAC
CACAAGCAGCTGCTGAAAGGATTTTATGGAAGCGAGGCCAGAGGAGTTTTGCAAGTTATG
AATTCGGCTCTTTACGAACAACTCGATCGTGGAACCGCATTTATCCAGATTGCCACGAAA
CGAAATCCTCAAGGAGAAATCCGAGGTCGAATTCATATTCCTAATCAGTGCTCTCAGGTC
GGGGGAAACACCAAGGTGAATTCCCAAGACGCAATTTTGCCTGAAAACAACCTGAAAGTT
GCCTCCGTTGCGCCACCTACCGAGATCACGACACGCTTCGGTGACTTGCACGCAGTGGTG
CATGACGGAGCTGCTCCCGAGCTCACCCAGCGGCGACTTGAAATGGATCCGATGTCATGT
TACTCAGAAGGCCGCTGGAGGGCAGATGGGAGCCAGTGGTCGCCTAGTTACGACCAACGC
TGCACGAAATGCGTCTGTGAGGGAGGCAGTGTGGTGTGCGATCCAATTTATTGTCCGCGC
TTAACCTGCAGTAGACCGGTTGCTCTCGAAAACGAATGCTGCCCTGTGTGTAATGATGGC
TTTGGAAGCATTCCCGCCAAAGAAGAAGGATTGCCCATTGGATCTTTATTTCAAAGCACT
CTGGACTTACACAGACAAAATATTGGAGGACTTCCACAAGTGAAAGAAGTTACTGAAGGT
TGTTATGATGAAAACGACGGTAAAATGCACAGCTATGGTTCATCTTGGACGCCATACTTC
CCCATGTTCGGCCTCGTGGCTTGCCTCAACTGCACATGTCGGATGAGCGGAGAAATAACG
TGCGGCAAGGTCACGTGTCCACCGGTCACGTGCAAAAACCCGAGGCGGGAAAGTCGGAAC
CAGTGTTGCAAAACGTGCCCAGAAGAAACAACCGGTTTCAGCACCAGGTCACGTGACCCG
CGTATGCAGGACGACAGTAGCGTGGGAATGTGCTCATTCGGGCGTGACCTGTACGCGCGT
GGTGACAAGTGGAGTGTGACGGTGCCCACTATGATTAAACGGGATTGCGTAGAATGCGAA
TGCCTCTATTCGGCCACTGGAGGTCTCAAATACAAGTGTAAATGGAAGTGCGCGCGGAAT
TAA
| PIRSF |
Chordin (IPR016353) - T[4-880] 4.4E-242 |
| ProSiteProfiles |
CHRD (IPR010895) - T[86-203] 14.816 - T[205-325] 6.654 - T[326-446] 15.738 - T[452-576] 17.897 |
| SMART |
CHRD (IPR010895) - T[328-443] 8.4E-10 - T[454-573] 8.8E-26 |
| Pfam |
CHRD (IPR010895) - T[331-441] 4.1E-6 - T[458-571] 6.6E-16 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[638-698] 11.746 - T[739-807] 9.935 |
| Pfam |
VWF_dom (IPR001007) - T[640-697] 2.4E-9 - T[745-806] 1.7E-7 |
| SMART |
VWF_dom (IPR001007) - T[640-697] 3.0E-10 - T[741-806] 8.4E-7 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[661-697] . - T[768-806] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CHRD_HUMAN | 32.599 % | 419 | 2.71E-132 |
