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TRANSCRIPT CARD

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  1. Transcript 'Phmamm.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Phmamm.CG.MTP2014.S413.g08436.01.t

Possible name(s)

SRSF12; SRSF2; SRSF8

Gene model

Phmamm.CG.MTP2014.S413.g08436

Location

S413 [7,609 / 8,905]

Sequences

Amino acid sequence

Length: 196

>Phmamm.CG.MTP2014.S413.g08436.01.p
MSRGGGARPPPGVDTMVSLKVDNLTYRTSPESLKRAFEKYGDVGDVYIPRDRYSKESRGF
AFVRFYDKRDAEDAMDCMDGKMLDGRELRVAMARYGRPNEPTRDYGRSRYGGPPSHGRRR
RRSRSYERRRSYSRSRSRSRGRRHSSRSNSRSRSRSRNRDRGRKQSSSPVRRRSRSRSSR
SSHSKSRSKSPLANGD

Nucleotide sequence

Length: 591

>Phmamm.CG.MTP2014.S413.g08436.01.t
ATGTCTCGTGGTGGTGGAGCAAGACCTCCGCCTGGAGTTGATACAATGGTTTCATTAAAG
GTTGACAATCTGACTTACCGCACTTCCCCAGAAAGTTTAAAACGAGCTTTTGAAAAATAT
GGTGACGTTGGTGATGTTTATATTCCACGTGATAGGTATTCCAAAGAAAGTCGCGGTTTT
GCATTTGTGAGGTTTTATGACAAACGTGATGCTGAAGATGCAATGGATTGCATGGATGGC
AAAATGTTGGATGGTCGAGAACTTAGAGTTGCCATGGCACGATATGGCCGGCCAAACGAA
CCAACTAGAGACTATGGCCGCAGTCGTTATGGTGGACCCCCATCGCATGGGCGTAGGCGA
CGCAGATCAAGATCATATGAAAGAAGAAGGAGCTATTCACGGTCTCGATCACGTTCTCGC
GGTAGGAGGCACTCCAGCCGAAGCAATTCGAGATCAAGAAGTCGGTCAAGAAACCGTGAT
CGTGGTCGCAAGCAAAGTTCTTCTCCAGTTAGAAGACGAAGTCGCTCAAGGTCTTCCCGC
AGCTCCCATTCCAAATCAAGATCCAAGTCTCCACTTGCGAATGGTGATTAA

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[6-105] 1.7E-25
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[10-124] 2.42E-31
ProSiteProfiles
RRM_dom (IPR000504) - T[17-95] 19.093
SMART
RRM_dom (IPR000504) - T[18-91] 4.3E-25
Pfam
RRM_dom (IPR000504) - T[20-89] 2.7E-21

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SRSF2_HUMAN 83.516 % 160 1.06E-49
SRSF8_HUMAN 68.868 % 144 5.56E-43
SRS12_HUMAN 34.802 % 84 8.75E-20