- Transcript 'KH2012:KH.C3.425.v1....' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Moocci.CG.ELv1_2.S40...' >
- Transcript 'Moocul.CG.ELv1_2.S71...' >
- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S387.g08142.02.t
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
S387 [58,941 / 65,743]
Amino acid sequence
Length: 869
>Phmamm.CG.MTP2014.S387.g08142.02.p
MSPTRLRTRSAPDYNIFKENIRFAGHMMASSIDLLTKINDEFLTCQICFETYTRPKSLNC
QHTFCLKCLEEYTPPNSTEVICPTCRCEQPLTPQGINGLKDNFFISSMSDMLKTVKEIRS
EDKDGTSLMCDTCDHDNRKVAISRCLDCTDFLCTECSTWHIRTKLTRHHKIVSLTEFESG
IHNQELKSRAKIYCMIHDGEVAKIYCQSCQCPICHECVECGHSRHRRCSLKEEVLNQGHQ
IENLLKTAREKTDVLRTLQTTLKDLKQVKKNDRENVEVEIEKTCEVFVNAIHKRKQELID
ELHNMHATEIKHINADEDSVEMQLSSLVSCMEFSRKVLEYGTPKEVLGLNNQMTQILHQL
LETHPAHTYHKTEETDTINFDTNADASVRVIRDNLGKLHILKTAFDEQVNKVLRQLDSFC
ASDSALVLKHNGKVHFHREESTETKLVLQLGKQGIAEGEFESTPNLAVNSVNEVITADYD
GAKIQIFDPQGNFKDSFVTEVNKRMCKPAGIAILHNDDIAVCCEDQVHIWTHEGKSVIGF
GKGLFGNCSSIAVDVENRIIVADVGKHCIFIHTDDGKLVTQFGAQGKGESKLVEPRYVAS
DSQCNVIVSDGGDCSVKKFTAQGEFLLSFGAEGPERGQFQGPRGICTDRHDNILVADCWN
HRVDIFTPDGCFMRHIATGADSLHFPWCITLTTNGKLVLSEDYSWSVKVFELPEYRNSSS
MSSMEEIISPTALIPDFDQLAGQFDLPNLLSNKVSWWLTSPNHHDSDHQQMNGIHNTIAT
SNVHPKPNRSLTSKKSSSSDSDLTSVLQPVASPQNHITPVAQQTNEVVTPNGIHGSSTSL
SSSSSGKVSYSGKIPASNDQAIVGIVNGT
Nucleotide sequence
Length: 2,610
>Phmamm.CG.MTP2014.S387.g08142.02.t
ATGAGTCCAACGAGGTTAAGAACGCGCTCGGCACCAGACTACAATATCTTCAAGGAAAAC
ATCAGGTTTGCCGGACATATGATGGCGAGTTCAATCGACTTGCTGACCAAGATCAACGAT
GAGTTTCTCACTTGTCAAATCTGCTTCGAGACGTACACTAGACCGAAAAGCCTCAACTGC
CAGCACACCTTCTGCCTGAAGTGCCTTGAAGAGTACACGCCGCCCAACAGCACGGAAGTG
ATCTGTCCCACCTGTCGATGCGAACAACCGCTTACCCCACAAGGCATCAACGGCCTGAAG
GACAATTTCTTCATTTCAAGTATGTCAGACATGCTGAAAACAGTGAAGGAAATTCGCAGT
GAAGACAAGGACGGCACCTCTCTGATGTGTGACACTTGCGACCACGACAACCGCAAGGTG
GCGATTTCGCGTTGTTTGGATTGCACAGATTTTCTTTGCACGGAATGTTCGACATGGCAC
ATCCGCACCAAGTTGACCAGACATCACAAGATCGTCTCGCTCACAGAGTTTGAATCTGGA
ATCCACAACCAGGAGTTGAAGAGCAGAGCAAAGATATATTGTATGATACACGACGGGGAG
GTAGCCAAAATCTATTGTCAATCATGTCAATGCCCAATCTGCCACGAATGTGTGGAATGC
GGTCACTCCCGGCACAGACGATGCTCATTAAAAGAGGAAGTGCTAAACCAAGGGCACCAG
ATCGAAAACCTTCTCAAGACAGCAAGGGAGAAGACAGACGTGCTACGAACGCTGCAAACA
ACTTTAAAAGACCTCAAACAAGTAAAAAAGAATGACCGGGAAAACGTGGAAGTTGAAATC
GAGAAGACCTGCGAAGTTTTTGTTAACGCCATTCACAAGCGCAAGCAGGAGTTAATCGAT
GAGTTACACAACATGCACGCAACTGAAATCAAGCACATAAACGCGGATGAAGATTCGGTC
GAAATGCAATTGAGCTCTTTGGTTTCCTGCATGGAATTTTCGCGAAAGGTTCTTGAGTAC
GGGACGCCGAAAGAAGTGTTGGGGTTGAATAACCAGATGACACAGATTCTTCACCAACTA
TTAGAGACACATCCAGCCCACACATATCATAAGACAGAAGAAACTGACACGATCAATTTC
GATACAAATGCCGATGCTAGTGTACGAGTAATAAGAGACAACCTGGGAAAACTTCACATT
CTGAAGACAGCGTTCGACGAACAAGTAAACAAGGTTCTGCGCCAGTTGGACTCATTTTGC
GCCTCAGACTCGGCACTTGTGCTAAAGCACAACGGCAAAGTTCACTTTCATCGGGAGGAA
TCAACCGAAACAAAACTTGTTTTGCAGCTTGGTAAACAAGGAATCGCGGAAGGCGAGTTT
GAATCGACACCAAACCTTGCAGTTAACTCAGTGAATGAGGTTATCACCGCTGATTACGAT
GGAGCCAAGATTCAAATATTTGACCCTCAAGGGAACTTCAAAGACTCATTCGTCACCGAA
GTTAACAAACGAATGTGCAAACCTGCTGGAATTGCCATTCTGCACAACGACGATATTGCT
GTATGCTGTGAAGATCAAGTTCATATTTGGACTCATGAAGGAAAGAGTGTGATCGGATTC
GGAAAAGGGTTATTCGGAAACTGTTCGAGCATTGCCGTGGACGTTGAGAACCGAATAATC
GTGGCTGATGTAGGAAAACATTGCATTTTCATTCACACCGACGACGGAAAGTTAGTGACG
CAGTTTGGTGCGCAAGGAAAGGGTGAAAGCAAGTTAGTGGAACCTCGATACGTTGCCAGC
GACTCGCAATGCAATGTCATTGTGTCAGACGGGGGTGACTGCAGTGTCAAGAAGTTCACA
GCACAAGGGGAGTTCCTATTAAGCTTCGGAGCGGAGGGACCTGAACGAGGACAGTTCCAA
GGTCCCAGGGGAATTTGCACCGATCGTCATGACAACATATTGGTGGCGGATTGTTGGAAC
CACAGAGTTGATATATTTACACCAGATGGCTGCTTCATGCGTCACATCGCCACAGGAGCA
GACAGTCTCCATTTTCCATGGTGCATCACACTCACAACCAACGGCAAACTTGTTCTGTCA
GAAGATTACAGCTGGTCTGTAAAAGTTTTTGAACTTCCAGAATATCGCAACTCTTCATCA
ATGTCGTCCATGGAAGAAATCATTTCTCCAACTGCCTTGATACCAGACTTTGACCAATTA
GCTGGACAGTTCGATTTGCCAAACTTGCTTAGTAATAAAGTGTCATGGTGGCTCACCTCA
CCAAACCATCACGATTCGGATCACCAACAAATGAACGGCATTCACAACACAATAGCGACA
TCTAACGTCCACCCAAAACCCAACCGAAGCTTAACCAGCAAAAAATCCTCGTCTAGTGAT
AGTGACTTGACCTCGGTGTTGCAACCAGTCGCGTCACCACAAAATCACATCACACCAGTT
GCACAACAAACAAACGAGGTTGTAACGCCGAACGGAATTCACGGAAGCAGTACAAGTTTA
AGCAGCAGCAGCAGTGGAAAGGTGTCTTATTCGGGTAAAATTCCCGCGTCCAACGATCAG
GCGATCGTGGGGATCGTGAATGGAACATAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[33-108] 7.8E-14 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[45-86] 13.124 |
| SMART |
Znf_RING (IPR001841) - T[45-85] 3.8E-7 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[45-83] 8.7E-8 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[60-69] . |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[125-174] 8.774 - T[189-230] 10.665 |
| SMART |
Znf_B-box (IPR000315) - T[125-174] 0.013 - T[189-230] 8.9E-4 |
| Pfam |
Znf_B-box (IPR000315) - T[191-230] 9.3E-7 |
| CDD |
Znf_B-box (IPR000315) - T[192-230] 7.37736E-8 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[435-630] 9.9E-41 - T[631-714] 5.9E-19 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[466-490] 7.196 - T[532-575] 8.471 - T[579-622] 9.971 - T[626-669] 15.173 - T[670-713] 5.161 |
| Pfam |
NHL_repeat (IPR001258) - T[639-666] 7.7E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIN41_HUMAN | 22.777 % | 150 | 3.85E-37 |
| TRIM2_HUMAN | 32.852 % | 172 | 8.36E-45 |
| TRIM3_HUMAN | 32.734 % | 165 | 2.34E-42 |