- Transcript 'Phmamm.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S374.g07965.02.t
Possible name(s)
VPS36
Gene model
Location
S374 [37,175 / 42,244]
Amino acid sequence
Length: 359
>Phmamm.CG.MTP2014.S374.g07965.02.p
EKTSYDDGSLLLTTHQIIWRDSSDFQICISLPLCLVVFCEKQSGGIGRSAKLSVHLQAAQ
ANRAPGPVSRSRYEYVRFSFKNGGESEFHTKLQSAMQTKEWEKTSSQATSSPVSKSSAKT
GPIRASGIVGIERKIEENRRVTDKNISVAFQDLTKLMEKAKEMVSLSSNIANKIKDKKGD
ITDDETVKFKSYLLSLGIPNPVTKETHGSGTHYHMQLAHEIASLLKQPLEENAGIMLLSD
AYCRINRARGMELLSPEDLLNACRMLDNLKLHMKLREFETGVLVLQLDSHSDEKVISQTT
ELVDDSKSLSAQELANLVSVSVLLAKERLLLAEKAGKLCRDDSDEGLRFYPNLFAQPMR
Nucleotide sequence
Length: 1,192
>Phmamm.CG.MTP2014.S374.g07965.02.t
TGAAAAGACCAGTTATGATGACGGATCATTGCTACTCACAACACATCAAATTATTTGGAG
AGATTCTTCTGACTTTCAAATTTGTATTTCTCTACCATTGTGCCTTGTTGTGTTTTGTGA
AAAACAGTCAGGAGGAATTGGCAGAAGTGCAAAGCTAAGTGTACACTTGCAAGCTGCACA
GGCAAATCGGGCACCCGGACCAGTTTCAAGAAGTCGTTATGAATATGTGCGATTTTCATT
CAAAAATGGGGGTGAATCTGAATTTCACACCAAACTTCAGAGTGCAATGCAGACAAAGGA
ATGGGAAAAAACTTCTTCACAAGCTACTTCAAGCCCTGTCAGCAAAAGCTCAGCAAAGAC
AGGCCCCATCAGAGCCTCTGGAATTGTTGGAATTGAACGAAAGATCGAGGAAAATCGAAG
AGTAACTGATAAGAATATTTCTGTGGCTTTTCAAGATTTGACGAAGCTGATGGAAAAAGC
AAAAGAAATGGTTTCTCTTTCATCAAACATTGCCAACAAAATAAAAGACAAAAAGGGAGA
CATAACAGATGATGAGACAGTTAAGTTCAAATCCTACCTCCTTAGTTTGGGAATTCCGAA
TCCAGTGACAAAGGAAACACATGGCAGTGGAACCCACTATCACATGCAGTTGGCACATGA
GATTGCCTCATTACTTAAACAACCTTTGGAGGAAAATGCTGGAATTATGCTCTTGTCTGA
TGCCTACTGCAGAATAAACAGAGCCAGAGGAATGGAGCTTTTGTCCCCAGAAGATCTGTT
GAATGCCTGTCGGATGTTGGACAATTTAAAACTTCACATGAAACTGAGGGAATTTGAAAC
TGGGGTGTTAGTGCTCCAACTTGACTCGCACAGTGATGAGAAAGTTATCAGCCAAACAAC
AGAACTGGTGGACGACAGCAAGAGTTTAAGCGCTCAGGAGCTTGCCAACTTGGTCAGTGT
GTCAGTTTTGCTTGCAAAGGAGAGATTATTGTTGGCTGAAAAAGCAGGCAAACTTTGCCG
CGACGATTCGGACGAAGGACTGAGGTTTTATCCAAACCTATTTGCACAACCAATGCGCTG
ACTTCCCATCTACTGCCCTCTTGCAATATTTTTATTGTTATCCAATAAAGTTTTATCCAA
ACAAAACTGGTTTTAAGTTTTTTGACGTACTGTGATAAAATATGTCCCTAAG
| ProSiteProfiles |
GLUE_dom (IPR021648) - T[1-108] 18.723 |
| Gene3D |
PH-like_dom_sf (IPR011993) - T[1-108] 3.6E-33 |
| Pfam |
GLUE_dom (IPR021648) - T[2-57] 8.8E-7 |
| PANTHER |
Vps36 (IPR037855) - T[2-356] 3.7E-129 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[157-279] 9.25E-10 - T[249-355] 2.45E-27 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[209-288] 4.2E-32 - T[289-357] 1.4E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS36_HUMAN | 57.939 % | 437 | 1.22E-153 |
