- Transcript 'Phmamm.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S232.g05813.01.t
Possible name(s)
CDH11; CDH18; CDH6
Gene model
Location
S232 [138,508 / 146,782]
Amino acid sequence
Length: 541
>Phmamm.CG.MTP2014.S232.g05813.01.p
IGSQLMRVSTTDPDARENKLCKYSIIEGQDSDKFEIVTLDNQGVIKVKERLDYETAENKM
YHIRIKATNIHLDPELSYLGPMEDEADVTIRVTDVDEPPEFTQPTFEFSVSEDAMKGFPI
GSVLAKDPEGDSFTYYMTDKEGKFQIDGGSGMIFVAGQLDRETKEKYEITVTAGTPAWKS
PDSVAKVIIRLSDVNDHPPQPLDGDKLEYIVCENHPDDIQELKPKVKMTDVDDPNSNGAP
FHFSFQTRNKDFRLVNNGDDTASLFTVRKDYSASEKYQFPIIVSDNGKPQLNATYLLTVR
VCKCADGVPQCDAMLTKGGIKLEVLIFLILACLLLLVLVVVLLTVRRRRRLRSDALIKAS
TSSFDDEDIRENIIQYDEEGGGEEDTAAYDLSALQKDYCSSASGSQVKFRMSSPPSTKVS
LLPPYDPTSNKRRPIPSEDIRDFVIDRKAAEDDDDRKLAFDSLQIYVYEGEGSDAGSLSS
LCTSSDESVQDYDYLCEWGPRFKKIADIYGAGKPDYSDNSASKASADLMRDTLSRPGRFK
H
Nucleotide sequence
Length: 2,382
>Phmamm.CG.MTP2014.S232.g05813.01.t
ATTGGATCTCAATTGATGCGAGTAAGCACAACAGATCCAGACGCACGAGAAAACAAACTA
TGCAAATATTCCATTATTGAGGGTCAAGATTCTGATAAGTTTGAAATTGTGACTTTGGAC
AATCAAGGTGTCATCAAAGTAAAAGAGCGCCTGGATTACGAAACTGCGGAGAATAAAATG
TATCATATCCGAATAAAAGCAACCAACATTCACCTTGACCCCGAACTCAGCTATTTGGGG
CCAATGGAGGACGAAGCTGACGTCACAATTCGAGTGACTGACGTCGATGAACCACCGGAA
TTCACTCAACCGACGTTTGAGTTTTCAGTGAGTGAAGATGCCATGAAAGGTTTCCCAATC
GGCTCTGTCTTAGCAAAAGACCCCGAAGGAGACTCCTTTACATATTATATGACAGACAAG
GAAGGAAAATTTCAGATTGACGGCGGCAGTGGGATGATTTTTGTGGCTGGTCAACTTGAT
CGTGAAACTAAAGAAAAATACGAGATCACTGTTACGGCAGGAACCCCAGCTTGGAAGTCT
CCAGACAGTGTTGCCAAAGTAATAATTCGCCTGTCAGATGTTAACGACCATCCACCTCAA
CCGCTAGATGGCGACAAACTCGAATACATTGTGTGTGAAAATCACCCAGATGACATTCAG
GAACTCAAGCCCAAGGTTAAAATGACTGATGTCGATGACCCTAATTCAAATGGTGCCCCG
TTCCATTTTTCCTTTCAAACACGGAATAAAGATTTTAGGCTTGTGAATAACGGAGACGAC
ACAGCTTCGTTGTTCACCGTCCGTAAGGATTACAGTGCATCTGAAAAATACCAATTCCCA
ATTATTGTGTCTGACAACGGAAAGCCTCAACTTAACGCCACGTACCTTTTAACAGTTCGT
GTTTGCAAATGTGCCGACGGTGTTCCCCAGTGCGACGCAATGCTTACCAAAGGTGGAATC
AAACTAGAAGTCTTGATTTTCCTTATACTCGCCTGTTTGCTGCTTCTGGTACTTGTTGTC
GTGTTGTTGACTGTGCGGAGGCGGCGACGATTGCGAAGTGATGCTCTGATTAAAGCGAGT
ACGAGCTCTTTCGATGATGAAGACATTCGTGAAAACATCATCCAATATGATGAGGAAGGC
GGTGGTGAAGAAGACACAGCTGCTTACGACCTTAGCGCTCTCCAAAAAGATTATTGCAGC
AGTGCATCTGGATCCCAAGTAAAATTCCGAATGTCAAGTCCACCCTCAACCAAGGTCAGT
CTGCTGCCACCTTACGACCCAACATCAAACAAAAGAAGACCGATTCCCAGTGAAGACATT
CGCGACTTTGTGATCGACAGAAAGGCAGCTGAAGACGATGATGACCGAAAACTCGCCTTT
GATTCTTTGCAGATCTACGTATACGAAGGCGAAGGTTCGGACGCTGGCTCCCTTAGTAGT
CTTTGTACTTCGTCAGACGAAAGTGTACAGGATTATGACTATCTCTGCGAGTGGGGACCC
CGCTTTAAGAAAATTGCTGACATCTATGGAGCCGGAAAACCTGACTATTCCGACAACAGT
GCTTCTAAAGCCAGTGCTGATCTAATGAGGGACACCCTCTCTCGACCTGGAAGGTTTAAA
CATTGAGAGAGAAGGCAGTGGGATGTAGAGCCGAATTTCAACTGGATTCCTGATGAGATT
GAAATAAGGGGTCGGAATGAGATGAAATCATAACGTAAGGGGGATACTACGTTACAAACT
ATAGTTTTTGTTTGAAAACTGTCTGTTAGCTATTCACAATATTTAAAGACTGATAGCCTA
TATAGCCTACTGTAGTCGCAATTTTACGTTTTTTACGTAGCCAACGATTTTTTAGGCAGC
CTGTTTAACGTTGCCTAAATAAAAGTATTTGAGGATTCCATTAGCCTACACAGCCCTGGC
GGGGGGGGGGTATAGCCAACTGTAGTCGCAATTTTACGTTTTTTACGTCGCCAACGATTT
TTTAGGCAGCCTGTTTAACGTAGCCTAAATAAAAGTATTTGAGGATTCCATTAGCCTACA
CAGCCCTGGCTATTTTCTGTTGTGTACCTGGCTTCAGCTACTTAAGGCCAAATTTTGATA
CCATGTACAAAGCTCGAAATAGCCGAACTGTTTTATATGTAACCGAATAGCATTGCGTTT
GTTGCCAGTGTCTAAACAATTTTGCATCCTATTTGGGCGTAACGTTTAGCCCATATATCA
CACTGTTCAGCTGCTTTTTGTTTCCATTCTATGAGAACAAGTAACTTCACTTTGTCGATT
GCTGTCCGTTCGTTTCTGTTTAATTTTTTTGTTTGAAACCTGTGAAATGAAAACCATTTG
CTTACTGCTTTTTTCTTAATCGCCAATATACTTTGTCGCGTT
| Pfam |
Cadherin (IPR002126) - T[2-93] 2.6E-12 - T[106-190] 5.4E-10 |
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[2-95] 2.14E-11 - T[90-202] 8.57E-22 - T[208-311] 5.71E-10 |
| SMART |
Cadherin (IPR002126) - T[8-100] 2.5E-11 - T[123-199] 1.7E-12 - T[226-309] 0.0024 |
| PRINTS |
Cadherin (IPR002126) - T[101-130] 9.9E-11 - T[149-175] 9.9E-11 - T[183-200] 9.9E-11 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[189-199] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[359-511] 7.5E-46 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[420-515] 1.6E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH6_HUMAN | 36.502 % | 290 | 4.71E-89 |
| CAD11_HUMAN | 36.604 % | 277 | 4.28E-84 |
| CAD18_HUMAN | 37.5 % | 300 | 1.05E-92 |
