- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phmamm.CG.MTP2014.S155.g04337.02.t
Possible name(s)
RPS4X; RPS4Y1; RPS4Y2
Gene model
Location
S155 [9,299 / 12,639]
Amino acid sequence
Length: 268
>Phmamm.CG.MTP2014.S155.g04337.02.p
RNLPFCRDKMARGPKKHLKRLNAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLSIFLRNR
LHYALTYTEVKRILMQRLVKVDGKVRTDTTYPAGFMDVITIEKTGENFRLVYDVKGRFAV
HRITNEEAKYKLCKVKKIGTAQKGIPYLTTHDARTIRYPHPDIKINDSVVVDIASGKITS
FVRFDSGQMCMITGGHNLGRVGIVQHRERHPGSFDIVHVKDSQGHLFATRLSNVFIIGQA
NKTMISLPRGKGIKLTIAEERDKRLAAK
Nucleotide sequence
Length: 806
>Phmamm.CG.MTP2014.S155.g04337.02.t
TCCGAAATCTTCCTTTCTGCCGTGACAAGATGGCGCGTGGACCGAAAAAGCATCTGAAGC
GGCTTAATGCCCCCAAACATTGGATGCTTGATAAACTTACTGGTGTATTCGCACCCAGAC
CATCCACTGGACCCCACAAACTGAGGGAATGTCTTCCTCTTAGCATTTTCTTGAGAAATC
GCCTCCACTATGCCTTGACCTACACAGAGGTGAAGAGGATTTTAATGCAACGATTGGTGA
AGGTTGATGGGAAAGTAAGGACTGACACCACTTATCCAGCTGGCTTTATGGATGTTATCA
CCATTGAAAAAACTGGTGAAAACTTCAGATTGGTCTACGATGTAAAGGGACGTTTTGCTG
TTCACAGAATTACCAATGAGGAGGCCAAGTACAAGCTCTGTAAGGTGAAAAAGATTGGAA
CAGCACAGAAGGGAATTCCGTACCTGACCACTCATGATGCGCGAACAATCCGCTATCCTC
ACCCTGACATCAAGATCAACGATTCTGTGGTGGTTGATATTGCAAGTGGCAAAATTACAT
CCTTTGTGCGATTTGACAGCGGTCAGATGTGCATGATCACTGGGGGCCATAACTTGGGTC
GAGTTGGAATAGTCCAGCATCGTGAACGCCACCCAGGTTCATTTGACATTGTTCATGTCA
AGGACAGCCAAGGTCATTTGTTTGCCACCAGGTTGTCGAATGTGTTCATCATCGGTCAGG
CCAACAAGACTATGATTTCCCTTCCAAGGGGCAAAGGAATTAAGCTGACAATTGCTGAGG
AGCGTGACAAGAGATTGGCGGCCAAG
| PANTHER |
Ribosomal_S4e (IPR000876) - T[10-268] 1.2E-144 |
| PIRSF |
Ribosomal_S4e (IPR000876) - T[10-250] 1.3E-97 |
| Pfam |
Ribosomal_S4e_N (IPR013843) - T[12-48] 8.0E-22 |
| Hamap |
Ribosomal_S4e (IPR000876) - T[16-247] 35.569 |
| ProSitePatterns |
Ribosomal_S4e_N_CS (IPR018199) - T[17-31] . |
| SMART |
S4_RNA-bd (IPR002942) - T[51-115] 3.2E-6 |
| ProSiteProfiles |
S4_RNA-bd (IPR002942) - T[51-114] 10.089 |
| CDD |
S4_RNA-bd (IPR002942) - T[53-121] 7.449E-6 |
| Pfam |
S4_RNA-bd (IPR002942) - T[53-99] 7.4E-7 |
| ProDom |
Ribosomal_S4e_central_region (IPR013845) - T[96-190] 3.0E-37 |
| Pfam |
Ribosomal_S4e_central_region (IPR013845) - T[104-178] 5.7E-36 |
| Gene3D |
Ribosomal_S4e_central_sf (IPR038237) - T[131-180] 9.3E-25 |
| Gene3D |
Rib_L2_dom2 (IPR014722) - T[184-254] 3.4E-35 |
| Pfam |
KOW (IPR005824) - T[187-220] 3.4E-5 |
| Pfam |
40S_S4_C (IPR032277) - T[221-268] 7.6E-26 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RS4X_HUMAN | 77.22 % | 432 | 2.34E-155 |
| RS4Y1_HUMAN | 76.062 % | 425 | 2.04E-152 |
| RS4Y2_HUMAN | 74.903 % | 414 | 2.98E-148 |