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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Haaura.CG.MTP2014.S499.g05417.01.t

Possible name(s)

RAB18; RAB2A; RAB2B

Gene model

Haaura.CG.MTP2014.S499.g05417

Location

S499 [27,195 / 28,810]

Sequences

Amino acid sequence

Length: 206

>Haaura.CG.MTP2014.S499.g05417.01.p
MDEELLTTLKILIIGESGVGKSSLLLRFTDDKFDPDQPATIGVDFKVKAITVDGNMVKLA
LWDTAGQERFRTLTPSYYRGAQGVIFVYDCTRADTFSRIGSWMTELETYATKPNVVKMLV
GNKIDKDGRLVQRDEGLKFARKHAMLFIEASAKTKDGVQCAFEELVEKIIQTPGLWENDG
QKSGGSFSVGGSSAQPQGMCGCSLI*

Nucleotide sequence

Length: 618

>Haaura.CG.MTP2014.S499.g05417.01.t
ATGGACGAGGAATTACTAACTACGTTGAAAATATTAATTATTGGCGAAAGCGGCGTTGGA
AAATCAAGTTTGCTGCTGAGGTTCACAGATGACAAGTTTGACCCAGATCAGCCTGCAACT
ATTGGTGTCGATTTTAAGGTGAAAGCTATCACCGTCGATGGTAACATGGTCAAGCTTGCA
TTGTGGGATACTGCAGGACAGGAAAGGTTCAGAACTCTCACACCCAGCTACTATAGAGGA
GCACAAGGCGTTATTTTTGTGTATGATTGCACCAGAGCTGACACTTTCTCCAGAATTGGC
TCATGGATGACAGAATTGGAAACGTATGCGACCAAACCGAATGTTGTCAAAATGCTTGTT
GGAAACAAAATAGACAAGGACGGAAGACTAGTCCAGAGAGACGAGGGTTTGAAATTTGCG
CGGAAACATGCAATGCTTTTCATTGAAGCCAGCGCAAAGACTAAAGACGGTGTCCAGTGT
GCTTTTGAAGAACTTGTTGAAAAAATCATTCAGACCCCTGGCTTGTGGGAAAACGATGGA
CAGAAAAGCGGAGGCTCCTTTTCTGTCGGAGGTTCGAGTGCACAGCCGCAGGGAATGTGT
GGTTGTAGTTTAATATGA

InterProScan

SUPERFAMILY
P-loop_NTPase (IPR027417) - T[6-174] 3.34E-55
TIGRFAM
Small_GTP-bd_dom (IPR005225) - T[8-164] 9.5E-32
Pfam
Small_GTPase (IPR001806) - T[10-170] 1.0E-54
ProSitePatterns
Sigma_54_int_dom_ATP-bd_1 (IPR025662) - T[11-24] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RAB18_HUMAN 77.66 % 306 3.81E-107
RAB2A_HUMAN 46.961 % 169 2.12E-53
RAB2B_HUMAN 47 % 168 9.41E-53