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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S221.g14603.01.t

Possible name(s)

BCL2L2-PABPN1; PABPN1; PABPN1L

Location

S221 [30,296 / 32,725]

Sequences

Amino acid sequence

Length: 229

>Harore.CG.MTP2014.S221.g14603.01.p
MSDILDQDNSLDGLNSHDGDSLGVDDSAILDHSTADISQNADSIVEDPELEAIKARVKEM
EAEAEKLKEMQNEVEKQISLSPTQATGAVAFPSIEEKVEADARSIYVGNVDYGATAEELE
QHFHGCGSVNRITILCDKFSGHPKGFAYIEFVDKESVETSVALDGSLFRGRQIKVNPKRT
NKPGFVFMERGGGGGRPRGRPRYRARGYYYPRPRRAYRGRVRATYYSPY

Nucleotide sequence

Length: 1,113

>Harore.CG.MTP2014.S221.g14603.01.t
AGACTCTACTTGTCGTATTTAAGTTAACGAAAAAGTCATGTCAGACATTCTTGATCAAGA
TAATAGTTTAGATGGTTTGAATTCTCATGATGGAGATTCCTTGGGTGTTGATGATTCCGC
GATACTGGATCACTCCACAGCAGATATCTCACAAAATGCAGACAGCATAGTTGAAGATCC
TGAGCTTGAAGCAATTAAAGCCCGAGTTAAGGAAATGGAAGCTGAGGCAGAGAAGTTAAA
AGAAATGCAAAATGAGGTTGAAAAACAAATAAGTTTGAGTCCAACTCAAGCAACCGGAGC
TGTTGCCTTTCCATCCATTGAAGAAAAAGTCGAAGCAGATGCAAGATCAATTTACGTTGG
AAATGTCGACTATGGGGCTACAGCAGAGGAATTAGAGCAACATTTTCACGGATGTGGTTC
AGTAAATAGAATAACCATATTATGTGATAAATTTTCTGGACATCCGAAAGGGTTCGCCTA
CATTGAATTTGTCGATAAAGAGTCGGTGGAAACTTCGGTAGCGCTGGATGGCTCACTTTT
TAGAGGAAGACAAATTAAGGTCAATCCCAAACGGACAAACAAACCTGGATTTGTATTCAT
GGAGCGTGGTGGTGGCGGTGGAAGGCCACGTGGACGACCTCGGTATCGTGCTAGAGGTTA
TTATTACCCGAGACCACGTAGAGCCTACAGGGGCAGAGTAAGAGCGACGTATTATTCACC
ATACTGAAAAAATCAGCGGTGTCTTGTAAGTTGATTTATACTTTTTGGTTTAGACAGCTT
TACTTCTGTTACACTCGATAAATCGAATATTCAAGTCACAACTTCCGCTAAAAAAGACAT
TACCCAATTGCCTGTTCAGTCATATTAACATTTTATTGTAATTTTATTTACTTGACTTGG
GAATTTTTAAGTTTTACATTACGGACTCTGTCGTACAAGTTTTATTCATAGAACATTGTT
AAATTATATGTAGGCATTTCTCTGTTTTGCTTTGGTTTCGTTTATGTTTTTTTTTGTTCG
ACTTGTGCTGAAAATTGACCAGCGGTATCTTGTTTTCAATCTTGTGATACATGCTTCGGT
AAGAACACTACCACTTCTGGGTAAGTAGGATTC

InterProScan

PANTHER
PABP2 (IPR034911) - T[18-229] 1.2E-95
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[95-207] 7.58E-30
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[97-185] 2.8E-25
ProSiteProfiles
RRM_dom (IPR000504) - T[103-180] 17.097
SMART
RRM_dom (IPR000504) - T[104-176] 7.8E-20
Pfam
RRM_dom (IPR000504) - T[105-174] 9.1E-17

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PABP2_HUMAN 69 % 238 1.6E-78
EPAB2_HUMAN 49.048 % 167 2.68E-51