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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1604.g15846.01.t

Possible name(s)

RDH12; RDH13

Gene model

Harore.CG.MTP2014.S1604.g15846

Location

S1604 [0 / 841]

Sequences

Amino acid sequence

Length: 279

>Harore.CG.MTP2014.S1604.g15846.01.p
NLAERGARVIIACRNLEKGEEAKKKIVEESKSENVVWKKLDLSSFESIREFAADINATES
RLDVLINNAGVMMCPQSETKDGFELQFGVNHMGHFLLTNLLLDLIKRSAPSRIVTVSSMA
HHRWFGTSMQWNDLNMRKNYESTLAYGQSKLCNVLFSRELSKKLQGTGVTSNSLEPGAVK
TDLQRHVGTLSWPTFRDYLASIGNYLTRWFYRTPEKGAQSSIYLTVAPELVEASGNFYAN
CKQTGESYDAKNDDYAERLWKMSEEFVGMKKKREEGGAE

Nucleotide sequence

Length: 841

>Harore.CG.MTP2014.S1604.g15846.01.t
GAATCTAGCCGAGCGAGGAGCAAGAGTTATTATCGCTTGCAGGAATTTGGAAAAGGGAGA
AGAAGCGAAAAAGAAGATTGTTGAAGAATCAAAATCAGAGAATGTTGTTTGGAAGAAACT
CGATCTCTCGTCGTTTGAATCTATTCGAGAATTTGCCGCTGACATCAATGCTACCGAATC
TCGACTGGATGTTCTCATTAATAACGCAGGGGTGATGATGTGCCCGCAATCCGAGACCAA
GGATGGGTTCGAGCTGCAGTTTGGGGTCAATCATATGGGGCATTTTCTGTTGACAAATTT
GCTTTTGGATTTGATAAAGAGAAGTGCTCCAAGCAGGATCGTGACTGTATCATCTATGGC
TCATCACAGATGGTTCGGAACTTCAATGCAATGGAACGATTTGAATATGAGGAAAAATTA
TGAGTCAACTCTAGCTTATGGTCAAAGCAAGCTATGTAATGTGCTTTTCTCTAGAGAGTT
GAGCAAGAAGCTGCAAGGTACTGGTGTTACATCAAATAGTTTGGAACCTGGAGCTGTTAA
GACAGATTTACAGAGGCATGTTGGAACCCTCAGTTGGCCAACATTCCGGGACTATCTCGC
ATCCATTGGAAATTATTTAACAAGATGGTTTTATAGGACCCCAGAAAAAGGGGCTCAAAG
CTCGATTTACTTAACGGTTGCTCCGGAGCTCGTCGAAGCCAGTGGGAATTTTTACGCCAA
CTGCAAACAGACGGGAGAGTCATACGATGCAAAGAATGATGATTATGCCGAGAGATTGTG
GAAAATGAGTGAAGAATTTGTTGGAATGAAGAAGAAAAGAGAGGAAGGAGGCGCAGAGTG
A

InterProScan

Pfam
SDR_fam (IPR002347) - T[2-121] 5.7E-19
SUPERFAMILY
NAD(P)-bd_dom_sf (IPR036291) - T[2-244] 6.46E-47
PRINTS
SDR_fam (IPR002347) - T[60-71] 1.9E-11 - T[60-71] 7.3E-6 - T[105-121] 1.9E-11 - T[111-119] 7.3E-6 - T[146-165] 1.9E-11 - T[146-165] 7.3E-6 - T[167-184] 1.9E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RDH11_HUMAN 46.269 % 229 3.61E-74
RDH13_HUMAN 48.708 % 231 5.71E-75
RDH12_HUMAN 48.339 % 232 1.5E-75