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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S1604.g07002.01.t

Possible name(s)

RDH12; RDH13

Gene model

Harore.CG.MTP2014.S1604.g07002

Location

S1604 [2,435 / 3,426]

Sequences

Amino acid sequence

Length: 298

>Harore.CG.MTP2014.S1604.g07002.01.p
MAEKPVETVIKSWVNPEIKIPGKTVVITGANTGIGLATAVDLAKREARVIIACRNMEKGE
EAKKKIVEESKSENVVLKKLDLSSFESIQEFAADINDTESRLDVLINNAGVMMCPQSETK
DGFEMQFGVNHLGHFLLTNLLLDLLKKSAPSRIMTVSSLLCNVLFSRELSKKLQGTGVTS
NSLEPGVVETDLRRHVGTHERPSFNDRLMSLVTYFTGWMLSTPEKGAQTSIYLAVAPELA
EVSGKFYSNCKQRGESYDAMNDEFAERLWKISEELTGLKAKSEGKGVKQSEKQKKSPE

Nucleotide sequence

Length: 897

>Harore.CG.MTP2014.S1604.g07002.01.t
ATGGCTGAAAAACCTGTGGAAACAGTCATCAAAAGTTGGGTGAATCCAGAGATCAAAATT
CCTGGCAAAACAGTGGTCATAACAGGAGCTAATACTGGAATTGGTTTAGCAACTGCTGTG
GATTTGGCAAAGAGAGAAGCGAGAGTTATTATCGCTTGCAGGAATATGGAAAAAGGAGAA
GAAGCAAAAAAGAAGATTGTTGAAGAATCAAAATCAGAGAATGTTGTTTTGAAGAAACTC
GATCTCTCGTCGTTTGAATCTATTCAAGAATTTGCTGCTGACATCAATGATACCGAATCT
CGACTGGATGTTCTGATAAATAACGCAGGGGTGATGATGTGCCCCCAATCCGAGACCAAG
GATGGGTTCGAGATGCAGTTTGGGGTCAATCATCTGGGTCATTTTCTCTTAACGAATTTG
TTACTGGATTTATTGAAAAAAAGTGCTCCAAGCCGAATCATGACTGTTTCTTCTCTGCTA
TGTAATGTGCTTTTTTCTAGAGAGTTGAGCAAGAAGCTACAAGGTACTGGTGTTACATCA
AATAGTTTGGAACCTGGAGTGGTTGAGACAGATTTACGGAGGCATGTTGGAACACATGAG
AGGCCTTCGTTCAATGACCGGTTGATGTCTTTAGTCACTTATTTCACAGGATGGATGCTA
AGCACCCCAGAAAAAGGGGCTCAAACCTCCATTTACTTGGCAGTGGCCCCAGAGCTTGCA
GAAGTCAGTGGAAAGTTTTACTCCAACTGCAAACAGAGGGGAGAGTCGTACGATGCGATG
AATGATGAATTTGCAGAGAGATTGTGGAAAATCAGTGAAGAATTGACCGGGCTGAAAGCG
AAAAGTGAGGGAAAAGGAGTGAAGCAGAGTGAGAAGCAGAAGAAATCTCCTGAGTAG

InterProScan

SUPERFAMILY
NAD(P)-bd_dom_sf (IPR036291) - T[18-280] 2.37E-51
Pfam
SDR_fam (IPR002347) - T[23-162] 3.3E-27
PRINTS
SDR_fam (IPR002347) - T[24-41] 1.7E-14 - T[100-111] 1.7E-14 - T[176-193] 1.7E-14

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RDH11_HUMAN 44.625 % 232 4.48E-75
RDH13_HUMAN 50.342 % 257 1.26E-84
RDH12_HUMAN 46.897 % 234 8.12E-76