- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chr9.g26008.01.t
Possible name(s)
CRIM1; FRAS1; SPON1
Gene model
Location
chr9 [20,202,572 / 20,212,362]
Amino acid sequence
Length: 575
>Boschl.CG.Botznik2013.chr9.g26008.01.p
MYKHVIAVLILVPIVIANRISINEEDLLSPDLGLMEDGQLGQFMQPDVINVALSSDGTGG
NYDIDPLEPIRNHKKKKPRRNNLTRVKNHEARHNARDNDVAPEHAIHNSTKVVAIETIRW
KPESQQKVDNCHRGQNQPSWNETDCISCKCQSHDVLCQKMECPKLECKDQINVEGECCPI
CAEKLCETSDGRRFKHNKEWHMDDCTFCKCKKGKVECSVEDCQVPRCKQPIKVPGRCCPV
CLDASCDATNGTKITSEEVWQEGSCTHCYCYGGETECDEERCPYINCTGRHVPAGQCCEK
CNEVVDCQVSEWGSWSDCPVQECGGGMAKRYRVVVVPPKNGGSFCPHMSEARMCERLPCD
VLPVCPVTEWSSWSYCTVTCGDGRRMRTRERAKATGAPMTSLIDCTETHFEETKQCELGS
CSELVVSDQKEEAVHDDICYQVLWSDWSPCSASMCGSGMQRRNQVLINQSHPRGHLCRLL
EQVRICQCDQSMMGSKVVRCQVSPWSPWTACSKTCGSGAARTKKRTVIQPPSGGAQCPKL
FVSKPCRMKACSSRVDSFSHGELNLRNTRFDCLRS
Nucleotide sequence
Length: 1,728
>Boschl.CG.Botznik2013.chr9.g26008.01.t
TGTATAAACACGTAATAGCTGTACTAATATTGGTGCCTATCGTGATTGCCAATCGGATAT
CCATCAATGAAGAAGACTTACTTTCGCCCGACTTGGGTTTGATGGAGGATGGTCAATTGG
GACAATTCATGCAACCGGACGTGATTAACGTTGCCTTGAGTAGCGATGGTACCGGGGGAA
ATTATGACATCGATCCTTTGGAGCCGATTCGTAATCACAAGAAAAAGAAGCCCAGGCGGA
ATAACTTGACGAGGGTGAAAAATCACGAAGCAAGACACAACGCACGAGATAACGATGTAG
CCCCGGAACACGCGATCCATAACTCGACGAAGGTGGTGGCTATAGAAACTATACGATGGA
AGCCAGAGTCGCAACAAAAAGGGGATAATTGTCACCGGGGCCAAAATCAGCCTTCTTGGA
ACGAAACCGATTGCATATCCTGCAAATGTCAGTCGCACGATGTGCTGTGTCAGAAGATGG
AGTGTCCTAAGCTGGAATGCAAGGATCAAATCAATGTTGAAGGAGAATGCTGCCCGATAT
GTGCCGGAAAGCTTTGCGAAACCTCCGACGGCCGTAGATTCAAACACAACAAAGAATGGC
ATATGGACGACTGCACGTTTTGCAAATGTAAGAAAGGAAAAGTGGAATGTTCGGTCGAGG
ATTGCCAAGTGCCTCGATGCAAGCAGCCCATCAAAGGTCCCGGGCGGTGTTGCCCTGTAT
GTTTGGACGCGTCCTGCGACGCCACGAACGGTACGAAGATAACCTCAGAGGAAGTCTGGC
AGGAAGGCTCCTGCACGCATTGCTACTGTTACGGCGGTGAGACTGAGTGCGACGAGGAAC
GGTGTCCTTACATTAACTGCACTGGAAGGCATGTTCCCGCAGGCCAATGCTGCGAGAAAT
GTAACGAAGGGGTGGATTGCCAAGTCTCGGAATGGGGTAGCTGGAGCGACTGTCCGGTGC
AGGAATGCGGCGGGGGCATGGCGAAAAGATATAGGGTGGTTGTCGTGCCGCCTAAAAACG
GAGGAAGCTTCTGTCCGCATATGAGCGAAGCTAGGATGTGCGAAAGGCTTCCGTGTGATG
GTCTTCCCGTGTGTCCGGTGACAGAATGGTCAAGTTGGAGTTACTGCACCGTTACTTGTG
GTGACGGCAGAAGGATGAGAACTAGGGAACGGGCTAAGGCCACCGGTGCCCCTATGACTT
CCCTGATCGATTGCACCGAAACTCATTTCGAAGAAACGAAACAGTGCGAACTAGGCTCAT
GTTCGGAACTGGTAGTTTCAGGCCAAAAAGAAGAAGCGGTGCACGACGATATTTGTTATC
AAGTGCTGTGGTCCGATTGGAGCCCGTGCTCGGCGTCGATGTGCGGTTCTGGCATGCAAA
GAAGGAACCAAGTTCTGATCAACCAGTCGCACCCGCGCGGCCATCTCTGTCGGCTATTGG
AACAAGTTAGGATTTGTCAATGCGATCAAAGCATGATGGGAAGCAAAGGCGTAAGATGTC
AAGTATCACCGTGGAGCCCTTGGACCGCGTGCTCCAAAACTTGCGGATCGGGCGCCGCGC
GGACCAAAAAACGGACGGTGATTCAACCGCCTTCTGGCGGAGCTCAATGTCCGAAGTTAT
TCGTTTCGAAACCTTGCAGGATGAAAGCCTGCTCCTCTAGAGTCGACAGCTTTTCTCATG
GTGAGTTAAACTTGCGTAACACTCGATTTGATTGCCTGCGATCGTGAT
| SMART |
VWF_dom (IPR001007) - T[131-181] 0.31 - T[186-241] 1.7E-7 - T[246-301] 0.087 |
| Pfam |
VWF_dom (IPR001007) - T[135-181] 2.9E-7 - T[189-241] 1.2E-8 |
| ProSiteProfiles |
VWF_dom (IPR001007) - T[135-182] 9.061 - T[184-242] 9.935 - T[244-302] 10.153 |
| ProSitePatterns |
VWF_dom (IPR001007) - T[265-301] . |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[304-354] 3.2E-14 - T[364-421] 2.5E-10 - T[438-486] 3.2E-8 - T[498-546] 7.5E-13 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[305-354] 1.28E-9 - T[365-421] 9.94E-9 - T[439-487] 6.67E-6 - T[498-551] 1.22E-8 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[306-360] 10.999 - T[364-422] 10.193 - T[437-489] 8.876 - T[499-552] 11.377 |
| SMART |
TSP1_rpt (IPR000884) - T[309-360] 1.8E-11 - T[367-422] 4.3E-10 - T[442-489] 0.16 - T[502-552] 2.2E-10 |
| Pfam |
TSP1_rpt (IPR000884) - T[310-359] 2.9E-9 - T[369-421] 1.1E-6 - T[444-487] 2.5E-5 - T[503-551] 8.9E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FRAS1_HUMAN | 35.26 % | 93.2 | 1.34E-19 |
| CRIM1_HUMAN | 31.351 % | 93.2 | 1.13E-19 |
| SPON1_HUMAN | 30.612 % | 95.1 | 2.19E-20 |
