Aniseed - Transcript Card

Transcript 'KH2012:KH.C2.520.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.520.v2.A.nonSL3-1

Possible name(s)

CWC22; NOM1

Gene model

KH2012:KH.C2.520

Location

KhC2 [2,653,724 / 2,658,201]

Sequences

Amino acid sequence

Length: 595

>KH.C2.520.v2.A.nonSL3-1
LSNCLLLTSVSTIIMRRRNHDKGKMRFNTIVKNVISDFGEEANEGKDGYDKPSATLGRKE
RRRQMKKQRKSRQMEPVEHVVATELVKSQPPKNPFKKTRQKRKPESGATKRKRKRAKLLE
KQEEFVREDNTEDDRTIQNIEKLMKIKKKKTLPSAFASDGLDFLLDVIGQGETESGLNDL
KNETKNYEDGDVIHHSDGLDSDDEEGDDQDEDILDDVLSDVPEEDFDDASDEPDEEDLVE
EDEMGSDAGWVNEVESEDVSEEEASVIDDEENNAVVVKPVETEESISGKYVPPALRRNMS
EKENEKRRKLERQIKGWLNRLTESEILPDVSFQDLVDAETKGRWWIVGSSWKGVPMLKKS
TETTVEVDTNVSSQLIEAARKLRMNTDVRRGIFYAIMSAEDYMDAFERVVKMGLKGKQLR
EISHVVVECCIQQRSFNLFYYHLLNKFCLYNREFIMTTQCTFWDKFKLLASYSKMQLSNL
SSLVSSLLLSQALPLACLKTLEYTEMDKPMVSFLRQVLIRISRSENADSKISEIFPKLGS
SKHSLVRQGLKLFIQHFMLGDANFMKEHEDIKDCLTNMDNKLVSSKQSSIFGGVC

Nucleotide sequence

Length: 1,902

>KH2012:KH.C2.520.v2.A.nonSL3-1
ATTATCGAATTGTTTATTACTTACTTCGGTATCTACAATTATAATGAGGAGACGAAACCA
TGATAAAGGCAAGATGAGGTTTAACACAATTGTAAAAAACGTGATAAGCGATTTTGGAGA
GGAGGCGAACGAAGGAAAGGATGGTTACGATAAACCCTCAGCGACTCTTGGTCGAAAAGA
ACGCAGAAGACAAATGAAAAAACAGCGTAAGAGTCGTCAAATGGAGCCTGTTGAGCACGT
TGTAGCGACAGAGCTGGTAAAATCACAGCCGCCTAAAAACCCCTTTAAAAAAACTAGACA
AAAACGAAAACCGGAAAGTGGGGCAACAAAACGGAAGCGAAAGCGAGCGAAACTTCTTGA
AAAACAAGAAGAGTTTGTGAGGGAAGACAATACTGAAGATGATAGGACAATCCAAAACAT
TGAAAAGTTGATGAAAATAAAGAAGAAAAAGACACTTCCATCAGCATTTGCAAGTGACGG
ATTGGATTTTCTACTTGATGTTATTGGACAAGGAGAAACTGAAAGCGGATTAAACGATCT
TAAAAATGAAACAAAGAACTATGAGGATGGTGATGTCATCCATCACAGTGATGGTCTTGA
TAGTGATGATGAGGAGGGGGACGATCAGGATGAAGATATCTTGGATGATGTTTTGTCAGA
TGTGCCGGAGGAGGATTTTGATGATGCGAGTGATGAACCAGATGAGGAGGATTTGGTTGA
AGAAGATGAGATGGGAAGTGATGCTGGTTGGGTGAATGAAGTTGAAAGTGAAGATGTTAG
TGAAGAAGAAGCATCTGTTATTGATGATGAAGAAAATAATGCTGTTGTTGTAAAACCAGT
TGAAACTGAGGAAAGTATCAGTGGAAAATATGTTCCACCTGCCTTGAGACGGAATATGTC
AGAAAAGGAAAACGAAAAACGAAGAAAACTTGAGCGGCAAATCAAAGGATGGTTGAACAG
ATTAACAGAATCAGAAATTTTGCCAGATGTATCATTTCAGGATCTGGTTGATGCGGAGAC
AAAAGGAAGATGGTGGATCGTGGGAAGTTCATGGAAAGGAGTTCCGATGCTAAAGAAGTC
AACGGAAACTACTGTAGAAGTTGACACCAACGTCAGTTCCCAGTTGATAGAAGCAGCTCG
TAAATTAAGAATGAATACTGATGTTCGTAGGGGAATATTTTACGCTATTATGTCAGCTGA
GGATTACATGGATGCCTTTGAAAGAGTGGTAAAGATGGGTTTAAAGGGAAAACAACTTCG
TGAGATTAGTCATGTTGTTGTGGAATGTTGTATTCAACAAAGATCATTCAACCTCTTCTA
TTATCATCTACTGAATAAATTCTGTCTTTATAACAGAGAATTCATAATGACAACACAATG
TACATTCTGGGATAAGTTTAAACTTCTTGCCTCGTACAGTAAAATGCAACTTTCGAATCT
ATCAAGTTTAGTTTCAAGTTTGCTTCTTTCGCAAGCACTTCCACTTGCATGTCTGAAGAC
ACTTGAGTACACGGAAATGGACAAACCAATGGTTTCATTTTTACGTCAGGTTTTAATTCG
GATATCAAGATCAGAAAATGCAGATTCTAAAATAAGTGAGATTTTCCCGAAACTTGGATC
TAGCAAGCACTCCCTGGTTCGTCAAGGATTAAAACTTTTTATTCAACATTTTATGCTCGG
TGATGCTAATTTCATGAAAGAACATGAAGATATAAAAGACTGTTTAACAAACATGGATAA
TAAACTCGTGTCTTCAAAGCAATCATCAATTTTTGGTGGAGTGTGTTAATACTGTTGTGA
ACTTGTGGTTACCGAATTTTTTGTTCTGTTTTACAATTATGTGTTGGTATATGTATTACT
ATTATGTATTGGTCCAGTTTGATATATCTGGACTTTTGACAG

InterProScan

Gene3D	MIF4-like_sf (IPR016021) - T[278-341] 6.6E-9
ProSiteProfiles	Initiation_fac_eIF4g_MI (IPR003891) - T[387-503] 17.684
SMART	Initiation_fac_eIF4g_MI (IPR003891) - T[388-494] 3.6E-9
Pfam	Initiation_fac_eIF4g_MI (IPR003891) - T[388-494] 3.4E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NOM1_HUMAN	44.828 %	235	1.39E-67