Aniseed - Transcript Card

Transcript 'KH2012:KH.C2.520.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.520.v2.A.ND1-1

Possible name(s)

CWC22; NOM1

Gene model

KH2012:KH.C2.520

Location

KhC2 [2,653,629 / 2,658,201]

Sequences

Amino acid sequence

Length: 611

>KH.C2.520.v2.A.ND1-1
YPLLQHNNNVVSILISLSNCLLLTSVSTIIMRRRNHDKGKMRFNTIVKNVISDFGEEANE
GKDGYDKPSATLGRKERRRQMKKQRKSRQMEPVEHVVATELVKSQPPKNPFKKTRQKRKP
ESGATKRKRKRAKLLEKQEEFVREDNTEDDRTIQNIEKLMKIKKKKTLPSAFASDGLDFL
LDVIGQGETESGLNDLKNETKNYEDGDVIHHSDGLDSDDEEGDDQDEDILDDVLSDVPEE
DFDDASDEPDEEDLVEEDEMGSDAGWVNEVESEDVSEEEASVIDDEENNAVVVKPVETEE
SISGKYVPPALRRNMSEKENEKRRKLERQIKGWLNRLTESEILPDVSFQDLVDAETKGRW
WIVGSSWKGVPMLKKSTETTVEVDTNVSSQLIEAARKLRMNTDVRRGIFYAIMSAEDYMD
AFERVVKMGLKGKQLREISHVVVECCIQQRSFNLFYYHLLNKFCLYNREFIMTTQCTFWD
KFKLLASYSKMQLSNLSSLVSSLLLSQALPLACLKTLEYTEMDKPMVSFLRQVLIRISRS
ENADSKISEIFPKLGSSKHSLVRQGLKLFIQHFMLGDANFMKEHEDIKDCLTNMDNKLVS
SKQSSIFGGVC

Nucleotide sequence

Length: 1,997

>KH2012:KH.C2.520.v2.A.ND1-1
TCTGGTTTTAAGATCTTTGAGAAAAGATTGTGCACCACTGCAGGGTAATACCCTTTGTTA
CAGCACAATAACAACGTGGTTTCGATTCTTATATCATTATCGAATTGTTTATTACTTACT
TCGGTATCTACAATTATAATGAGGAGACGAAACCATGATAAAGGCAAGATGAGGTTTAAC
ACAATTGTAAAAAACGTGATAAGCGATTTTGGAGAGGAGGCGAACGAAGGAAAGGATGGT
TACGATAAACCCTCAGCGACTCTTGGTCGAAAAGAACGCAGAAGACAAATGAAAAAACAG
CGTAAGAGTCGTCAAATGGAGCCTGTTGAGCACGTTGTAGCGACAGAGCTGGTAAAATCA
CAGCCGCCTAAAAACCCCTTTAAAAAAACTAGACAAAAACGAAAACCGGAAAGTGGGGCA
ACAAAACGGAAGCGAAAGCGAGCGAAACTTCTTGAAAAACAAGAAGAGTTTGTGAGGGAA
GACAATACTGAAGATGATAGGACAATCCAAAACATTGAAAAGTTGATGAAAATAAAGAAG
AAAAAGACACTTCCATCAGCATTTGCAAGTGACGGATTGGATTTTCTACTTGATGTTATT
GGACAAGGAGAAACTGAAAGCGGATTAAACGATCTTAAAAATGAAACAAAGAACTATGAG
GATGGTGATGTCATCCATCACAGTGATGGTCTTGATAGTGATGATGAGGAGGGGGACGAT
CAGGATGAAGATATCTTGGATGATGTTTTGTCAGATGTGCCGGAGGAGGATTTTGATGAT
GCGAGTGATGAACCAGATGAGGAGGATTTGGTTGAAGAAGATGAGATGGGAAGTGATGCT
GGTTGGGTGAATGAAGTTGAAAGTGAAGATGTTAGTGAAGAAGAAGCATCTGTTATTGAT
GATGAAGAAAATAATGCTGTTGTTGTAAAACCAGTTGAAACTGAGGAAAGTATCAGTGGA
AAATATGTTCCACCTGCCTTGAGACGGAATATGTCAGAAAAGGAAAACGAAAAACGAAGA
AAACTTGAGCGGCAAATCAAAGGATGGTTGAACAGATTAACAGAATCAGAAATTTTGCCA
GATGTATCATTTCAGGATCTGGTTGATGCGGAGACAAAAGGAAGATGGTGGATCGTGGGA
AGTTCATGGAAAGGAGTTCCGATGCTAAAGAAGTCAACGGAAACTACTGTAGAAGTTGAC
ACCAACGTCAGTTCCCAGTTGATAGAAGCAGCTCGTAAATTAAGAATGAATACTGATGTT
CGTAGGGGAATATTTTACGCTATTATGTCAGCTGAGGATTACATGGATGCCTTTGAAAGA
GTGGTAAAGATGGGTTTAAAGGGAAAACAACTTCGTGAGATTAGTCATGTTGTTGTGGAA
TGTTGTATTCAACAAAGATCATTCAACCTCTTCTATTATCATCTACTGAATAAATTCTGT
CTTTATAACAGAGAATTCATAATGACAACACAATGTACATTCTGGGATAAGTTTAAACTT
CTTGCCTCGTACAGTAAAATGCAACTTTCGAATCTATCAAGTTTAGTTTCAAGTTTGCTT
CTTTCGCAAGCACTTCCACTTGCATGTCTGAAGACACTTGAGTACACGGAAATGGACAAA
CCAATGGTTTCATTTTTACGTCAGGTTTTAATTCGGATATCAAGATCAGAAAATGCAGAT
TCTAAAATAAGTGAGATTTTCCCGAAACTTGGATCTAGCAAGCACTCCCTGGTTCGTCAA
GGATTAAAACTTTTTATTCAACATTTTATGCTCGGTGATGCTAATTTCATGAAAGAACAT
GAAGATATAAAAGACTGTTTAACAAACATGGATAATAAACTCGTGTCTTCAAAGCAATCA
TCAATTTTTGGTGGAGTGTGTTAATACTGTTGTGAACTTGTGGTTACCGAATTTTTTGTT
CTGTTTTACAATTATGTGTTGGTATATGTATTACTATTATGTATTGGTCCAGTTTGATAT
ATCTGGACTTTTGACAG

InterProScan

Gene3D	MIF4-like_sf (IPR016021) - T[294-357] 6.8E-9
ProSiteProfiles	Initiation_fac_eIF4g_MI (IPR003891) - T[403-519] 17.684
Pfam	Initiation_fac_eIF4g_MI (IPR003891) - T[404-510] 3.5E-17
SMART	Initiation_fac_eIF4g_MI (IPR003891) - T[404-510] 3.6E-9

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NOM1_HUMAN	44.828 %	234	2.5E-67