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TRANSCRIPT CARD

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  1. Transcript 'Cisavi.CG.ENS81.R99....' > 
  2. Transcript 'KH2012:KH.C1.264.v2....'

Transcript Model

Transcript Id

KH2012:KH.C1.264.v2.A.nonSL7-1

Possible name(s)

YBX1; YBX2; YBX3

Gene model

KH2012:KH.C1.264

Location

KhC1 [3,320,249 / 3,326,393]

Sequences

Amino acid sequence

Length: 286

>KH.C1.264.v2.A.nonSL7-1
RSNIMSEQAGQLEQVTENAPVERKVLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIHQT
AIIKNNPKKYLRSVGDGENVEFDVVEGEKGLPEAANVTGPNGEPVKGSKYAADRRRYKPR
YKPRPKEHTPEGNENQEGETENVSPEGMARNQQRPRRYYRRPFWIRRGPRKPQQEEGEAK
ENGVVADHVEGEDGEQPQRQRRPRKPRYRPKRSPQDGEAEVNGEVPRENGEEGEQRPARR
RRPRNRPKGPRRPKPTENENGNAVPNGQENADAPVAQSQVPVPKSE

Nucleotide sequence

Length: 1,606

>KH2012:KH.C1.264.v2.A.nonSL7-1
AAGATCTAACATCATGTCGGAGCAGGCCGGGCAGCTCGAACAGGTCACTGAAAATGCCCC
TGTCGAGAGAAAAGTTCTCGCATCCCATTGCTCTGGAGTTGTCAAGTGGTTTAATGTGAG
AAACGGTTACGGTTTCGTTAACCGCGACGACAACAAGGAGGACGTGTTCATTCACCAGAC
CGCCATCATCAAAAACAACCCAAAGAAATATCTTCGAAGTGTTGGTGATGGAGAAAACGT
AGAGTTCGATGTAGTGGAAGGTGAAAAGGGTTTGCCTGAAGCTGCAAATGTAACCGGACC
GAATGGTGAGCCTGTAAAAGGCAGCAAGTATGCTGCTGATAGACGCAGATACAAACCACG
CTACAAACCAAGACCCAAGGAGCATACTCCGGAGGGAAATGAGAACCAAGAGGGTGAGAC
TGAAAATGTTAGCCCTGAGGGAATGGCCCGTAATCAGCAGCGTCCACGCCGCTATTACAG
AAGACCTTTTTGGATCCGAAGGGGGCCTAGAAAACCACAGCAGGAGGAAGGAGAAGCAAA
GGAGAATGGAGTGGTTGCTGATCATGTTGAAGGGGAAGATGGCGAACAACCTCAACGACA
ACGTAGACCAAGAAAGCCACGTTACCGACCAAAACGGTCCCCACAAGACGGGGAAGCTGA
GGTAAATGGTGAGGTCCCACGTGAGAATGGAGAGGAGGGTGAACAACGGCCAGCTCGTCG
CCGACGTCCCCGCAACCGCCCAAAGGGACCAAGACGCCCCAAACCCACGGAGAATGAGAA
CGGCAATGCTGTACCAAATGGACAAGAGAATGCTGATGCACCTGTCGCGCAGAGCCAGGT
TCCAGTACCAAAATCAGAGTAAAAAGCGCGATCAGCGCTCGGTGGAGGGGTGGTTGTTTC
GTCATATTGTTGTAGCGTCAGGACAATAATGCTTTTTAAGTTTTCCTTGTGTGCATGGCC
ACCGTCGCCCTAGCTTGCACCGTAGATTTAGTTAACACCCCAACAGCAGCAAGAACCCCT
GACCGATAAATACTGCTTCTCTAACACCTTCTCGAATTTCTGTAATTGGTCGACCCTGCG
CATGCGGTCGCACGACACTGAATGTTTCCACCACGTAATTTTGAAAATTTAAGCTCAAAG
CGCATTAACATCACAAGCATTTTAAAGCAGCACTTGTGCCTGTAATTCACAGTGCTGATA
AAGGTTAACATCTAGTTTATGAAGTAAATTCTGTGTCTGAGACGTTTACCACCGGGCCTG
TCTCTGCACACGGACTACAATAAAAGGCCCTTTAACCAGTTATACTTGAATAAGCGTCCA
CGGAACGCCCCTCGCCCGAAATTTTCATCGTTGGTTGTTGTTGTTGGGTTAATATTTAGT
TTTCATCTGATACATTTAGTTGTTCACACCAAAACGATAACGTGGCGTTGATTCCGGCCG
GGAACACCAAAACGTTACTCGTTATCAACTCCACTTGATTGTCGCTGTTGTAACGAGTGC
GTTTGCAATCAATATTGCTGTTTTCCTTTGCTGCTTGTTCAGTTTAATTTAGTTCACTGT
AAATTAAATTCGGTTGTTCCCAGCCAAAATAAACCATACCATTTCA

InterProScan

SUPERFAMILY
NA-bd_OB-fold (IPR012340) - T[28-99] 2.79E-19
Pfam
CSP_DNA-bd (IPR002059) - T[31-99] 5.7E-23
SMART
CSD (IPR011129) - T[31-100] 1.9E-19
CDD
CSP_DNA-bd (IPR002059) - T[32-99] 7.64807E-20
PRINTS
CSP_DNA-bd (IPR002059) - T[32-47] 1.5E-19 - T[53-62] 1.5E-19 - T[72-90] 1.5E-19

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
YBOX1_HUMAN 74.257 % 157 4.46E-46
YBOX3_HUMAN 78.495 % 155 9.71E-45
YBOX2_HUMAN 52.023 % 154 9.86E-45