- Transcript 'KH2012:KH.C1.1156.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1156.v1.A.SL2-1
Possible name(s)
COL21A1; COL6A5; OTOL1
Gene model
Location
KhC1 [584,082 / 586,560]
Amino acid sequence
Length: 679
>KH.C1.1156.v1.A.SL2-1
VGRLEMSFHLILTTLLVVLALNLIPAQSDQASTQVRYAESETADTAVVVPNLQALGENAS
EDTFTVTVESEQQSGEAKGCASSDCQSTTSECGSSYEYKRDCVSYGCCGCCGCGGCGSSS
TGTSEISLLLRTMDRLTQGPPGPQGPPGLQGPAGFPGMPGPPGKAGFPGIQGQTGLQGPP
GIGIKGMKGDCGPRGERGENGTPGICKPGLPGKPGPPGPPGVVYTSEELQSSPLKIAGPP
GQPGEKGTQGEPGMPGIEGERGETGVGVKGEPGMKGMTGPPGPPGPPGLSSSDVETVKVV
RQTDGPRGPKGEKGESITGTPGVKGDKGMPGMKGEGVEGPVGAPGPRGPTGPKGDIGVGV
VGPRGLPGPPGTPGVGSRGRDGVDGEKGEMGPRGLQGPPGESGNQGSGNLVNGGSVKGGK
GDKGEAGRKGMRGDDGVDGRPGRNGAATKGMKGMSGPPGPPGASVKGEAGPPGPPGPAGR
SGGRMSMGGSSSSSSSAQCCRREQVAFMAALSHNFQGNNQGVAFDNVLTNIGSAYRSATG
CFIVPAGGIYVFHLHILRCRSSGPLYVHMMRNNEMVSSGTNQDTRFETTSASAVLTLQRG
DVVWVRLRQGIIYGHSPSHYSTFSGYAIQLNEAVNVAAAMANQRYKSGSSYNLYRESTSN
VLTEEAAARARSMMMSGND
Nucleotide sequence
Length: 2,478
>KH2012:KH.C1.1156.v1.A.SL2-1
GTATATATGAGTAGGGCGATTAGAGATGTCGTTTCATTTAATATTAACCACGTTACTGGT
TGTGCTTGCTTTGAATCTAATACCTGCACAAAGTGACCAAGCTTCCACACAAGTAAGATA
CGCTGAGAGTGAGACAGCGGATACAGCGGTTGTTGTGCCGAACCTGCAAGCGTTGGGTGA
AAATGCAAGTGAAGATACGTTTACTGTAACCGTGGAATCAGAGCAACAAAGCGGGGAAGC
GAAAGGCTGCGCGTCGTCTGATTGTCAATCAACGACCAGTGAATGCGGGTCAAGTTATGA
ATATAAGAGGGATTGTGTGTCTTATGGTTGCTGTGGTTGTTGTGGATGTGGGGGTTGTGG
TTCAAGTTCAACCGGGACGTCGGAGATTAGTTTATTACTAAGGACGATGGACAGGTTAAC
TCAAGGACCTCCCGGCCCACAAGGACCACCGGGTTTGCAAGGTCCCGCGGGCTTTCCTGG
CATGCCAGGCCCGCCGGGGAAGGCAGGATTTCCCGGTATCCAAGGTCAGACCGGATTACA
AGGCCCGCCTGGGATCGGCATCAAAGGAATGAAGGGAGATTGTGGACCTCGAGGTGAACG
TGGTGAGAACGGAACACCCGGGATATGTAAGCCAGGACTACCGGGCAAACCTGGCCCACC
TGGTCCACCAGGGGTGGTGTATACGTCGGAAGAACTACAGAGTTCTCCATTGAAGATTGC
AGGGCCGCCTGGACAGCCTGGTGAGAAGGGAACGCAAGGTGAACCTGGGATGCCAGGGAT
TGAAGGGGAGAGGGGGGAGACGGGAGTTGGAGTTAAAGGTGAACCTGGTATGAAAGGAAT
GACTGGTCCTCCGGGTCCTCCTGGACCTCCTGGACTTTCATCAAGTGATGTAGAGACAGT
TAAGGTTGTTCGGCAAACTGATGGGCCGCGGGGACCGAAGGGTGAAAAGGGGGAGTCGAT
AACAGGTACTCCTGGTGTTAAGGGCGATAAAGGGATGCCTGGTATGAAGGGGGAAGGTGT
GGAAGGACCTGTTGGCGCTCCTGGGCCTAGAGGACCTACAGGGCCAAAGGGGGACATTGG
TGTCGGTGTCGTTGGGCCAAGAGGGCTCCCTGGTCCACCGGGCACACCTGGGGTTGGGAG
CAGGGGTAGAGATGGTGTCGACGGCGAAAAGGGGGAGATGGGACCACGTGGGTTGCAAGG
ACCACCCGGGGAATCTGGGAATCAAGGAAGTGGTAACCTTGTTAATGGTGGGTCTGTGAA
AGGGGGCAAGGGAGATAAAGGTGAAGCTGGTAGAAAGGGTATGCGGGGCGATGATGGTGT
TGACGGGCGTCCTGGTCGCAATGGGGCGGCTACTAAAGGTATGAAGGGAATGTCCGGTCC
ACCTGGACCTCCAGGAGCATCGGTGAAGGGAGAAGCAGGTCCGCCAGGTCCCCCAGGTCC
TGCAGGGAGATCAGGAGGTAGGATGAGCATGGGAGGATCGAGTAGTTCCTCCTCATCTGC
ACAATGTTGTAGGAGGGAGCAGGTCGCTTTCATGGCGGCATTGTCGCATAACTTTCAAGG
CAACAACCAAGGGGTGGCGTTTGATAATGTGCTTACTAACATTGGATCTGCGTATAGATC
GGCTACTGGATGCTTCATTGTACCAGCGGGTGGGATATATGTCTTCCATCTACATATACT
TAGATGTAGAAGCAGTGGGCCGTTGTACGTTCATATGATGCGAAACAACGAGATGGTCAG
TTCAGGTACCAACCAAGACACAAGGTTTGAAACAACCTCAGCAAGTGCTGTATTAACATT
ACAACGTGGGGACGTGGTTTGGGTGCGGCTGCGACAAGGTATAATATACGGACACAGCCC
TTCACATTACTCAACCTTTTCCGGCTACGCGATCCAACTAAACGAAGCCGTAAACGTCGC
CGCTGCCATGGCGAACCAGAGATACAAGTCAGGTTCAAGTTACAACTTATACAGAGAATC
GACATCGAACGTTTTAACCGAAGAAGCGGCGGCACGAGCAAGGTCTATGATGATGAGTGG
TAACGACTGATACGGGGCGAGACATAAACCAAGTGGTTGGTGAAGGGGAGCCCGTGATGG
GAATATTTATTTTTGATTACATTGTTTTTATAGAGCGCCATACGCTACACACGCGTGTTT
ATCAAGGTGTATTTCAACGACGATATCTTAAACATACACCACTATACTGGGAAGTCAAAC
TGAAGAGTTTATTATCCGCGAAAATTTCACATTTGCTTCATTGCTTTTTTATATTCACTA
TTGTATGTTTAGTTGTTGCATCCGCGTATTAAGATTTATTCACAGCAGTATTACTGACGT
GTGGGGCACACAAGTATCATGAGTGTGGTGTACTTGATAATAATGGCACCTCACAGTAAA
TATGCGACCCCCACCCACACAATCACAATATGTTCCATTTACAATGAATATACGTGTGTT
GCGATGTAAGCGAGAAAT
| Pfam |
Collagen (IPR008160) - T[138-181] 6.0E-7 - T[238-289] 7.8E-8 |
| SMART |
C1q_dom (IPR001073) - T[498-631] 1.7E-19 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[500-634] 29.368 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[501-635] 1.2E-35 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[504-628] 8.34E-29 |
| Pfam |
C1q_dom (IPR001073) - T[506-626] 1.8E-26 |
| PRINTS |
C1q_dom (IPR001073) - T[515-541] 3.2E-12 - T[542-561] 3.2E-12 - T[587-608] 3.2E-12 - T[619-629] 3.2E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6A5_HUMAN | 36.412 % | 112 | 2.44E-25 |
| COLA1_HUMAN | 33.797 % | 123 | 4.16E-29 |
| OTOL1_HUMAN | 34.634 % | 126 | 7.4E-31 |
