- Transcript 'KH2012:KH.C1.1156.v1...'
Transcript Model
Transcript Id
KH2012:KH.C1.1156.v1.A.nonSL4-1
Possible name(s)
COL21A1; COL6A5; OTOL1
Gene model
Location
KhC1 [584,082 / 586,374]
Amino acid sequence
Length: 620
>KH.C1.1156.v1.A.nonSL4-1
SEDTFTVTVESEQQSGEAKGCASSDCQSTTSECGSSYEYKRDCVSYGCCGCCGCGGCGSS
STGTSEISLLLRTMDRLTQGPPGPQGPPGLQGPAGFPGMPGPPGKAGFPGIQGQTGLQGP
PGIGIKGMKGDCGPRGERGENGTPGICKPGLPGKPGPPGPPGVVYTSEELQSSPLKIAGP
PGQPGEKGTQGEPGMPGIEGERGETGVGVKGEPGMKGMTGPPGPPGPPGLSSSDVETVKV
VRQTDGPRGPKGEKGESITGTPGVKGDKGMPGMKGEGVEGPVGAPGPRGPTGPKGDIGVG
VVGPRGLPGPPGTPGVGSRGRDGVDGEKGEMGPRGLQGPPGESGNQGSGNLVNGGSVKGG
KGDKGEAGRKGMRGDDGVDGRPGRNGAATKGMKGMSGPPGPPGASVKGEAGPPGPPGPAG
RSGGRMSMGGSSSSSSSAQCCRREQVAFMAALSHNFQGNNQGVAFDNVLTNIGSAYRSAT
GCFIVPAGGIYVFHLHILRCRSSGPLYVHMMRNNEMVSSGTNQDTRFETTSASAVLTLQR
GDVVWVRLRQGIIYGHSPSHYSTFSGYAIQLNEAVNVAAAMANQRYKSGSSYNLYRESTS
NVLTEEAAARARSMMMSGND
Nucleotide sequence
Length: 2,292
>KH2012:KH.C1.1156.v1.A.nonSL4-1
AAGTGAAGATACGTTTACTGTAACCGTGGAATCAGAGCAACAAAGCGGGGAAGCGAAAGG
CTGCGCGTCGTCTGATTGTCAATCAACGACCAGTGAATGCGGGTCAAGTTATGAATATAA
GAGGGATTGTGTGTCTTATGGTTGCTGTGGTTGTTGTGGATGTGGGGGTTGTGGTTCAAG
TTCAACCGGGACGTCGGAGATTAGTTTATTACTAAGGACGATGGACAGGTTAACTCAAGG
ACCTCCCGGCCCACAAGGACCACCGGGTTTGCAAGGTCCCGCGGGCTTTCCTGGCATGCC
AGGCCCGCCGGGGAAGGCAGGATTTCCCGGTATCCAAGGTCAGACCGGATTACAAGGCCC
GCCTGGGATCGGCATCAAAGGAATGAAGGGAGATTGTGGACCTCGAGGTGAACGTGGTGA
GAACGGAACACCCGGGATATGTAAGCCAGGACTACCGGGCAAACCTGGCCCACCTGGTCC
ACCAGGGGTGGTGTATACGTCGGAAGAACTACAGAGTTCTCCATTGAAGATTGCAGGGCC
GCCTGGACAGCCTGGTGAGAAGGGAACGCAAGGTGAACCTGGGATGCCAGGGATTGAAGG
GGAGAGGGGGGAGACGGGAGTTGGAGTTAAAGGTGAACCTGGTATGAAAGGAATGACTGG
TCCTCCGGGTCCTCCTGGACCTCCTGGACTTTCATCAAGTGATGTAGAGACAGTTAAGGT
TGTTCGGCAAACTGATGGGCCGCGGGGACCGAAGGGTGAAAAGGGGGAGTCGATAACAGG
TACTCCTGGTGTTAAGGGCGATAAAGGGATGCCTGGTATGAAGGGGGAAGGTGTGGAAGG
ACCTGTTGGCGCTCCTGGGCCTAGAGGACCTACAGGGCCAAAGGGGGACATTGGTGTCGG
TGTCGTTGGGCCAAGAGGGCTCCCTGGTCCACCGGGCACACCTGGGGTTGGGAGCAGGGG
TAGAGATGGTGTCGACGGCGAAAAGGGGGAGATGGGACCACGTGGGTTGCAAGGACCACC
CGGGGAATCTGGGAATCAAGGAAGTGGTAACCTTGTTAATGGTGGGTCTGTGAAAGGGGG
CAAGGGAGATAAAGGTGAAGCTGGTAGAAAGGGTATGCGGGGCGATGATGGTGTTGACGG
GCGTCCTGGTCGCAATGGGGCGGCTACTAAAGGTATGAAGGGAATGTCCGGTCCACCTGG
ACCTCCAGGAGCATCGGTGAAGGGAGAAGCAGGTCCGCCAGGTCCCCCAGGTCCTGCAGG
GAGATCAGGAGGTAGGATGAGCATGGGAGGATCGAGTAGTTCCTCCTCATCTGCACAATG
TTGTAGGAGGGAGCAGGTCGCTTTCATGGCGGCATTGTCGCATAACTTTCAAGGCAACAA
CCAAGGGGTGGCGTTTGATAATGTGCTTACTAACATTGGATCTGCGTATAGATCGGCTAC
TGGATGCTTCATTGTACCAGCGGGTGGGATATATGTCTTCCATCTACATATACTTAGATG
TAGAAGCAGTGGGCCGTTGTACGTTCATATGATGCGAAACAACGAGATGGTCAGTTCAGG
TACCAACCAAGACACAAGGTTTGAAACAACCTCAGCAAGTGCTGTATTAACATTACAACG
TGGGGACGTGGTTTGGGTGCGGCTGCGACAAGGTATAATATACGGACACAGCCCTTCACA
TTACTCAACCTTTTCCGGCTACGCGATCCAACTAAACGAAGCCGTAAACGTCGCCGCTGC
CATGGCGAACCAGAGATACAAGTCAGGTTCAAGTTACAACTTATACAGAGAATCGACATC
GAACGTTTTAACCGAAGAAGCGGCGGCACGAGCAAGGTCTATGATGATGAGTGGTAACGA
CTGATACGGGGCGAGACATAAACCAAGTGGTTGGTGAAGGGGAGCCCGTGATGGGAATAT
TTATTTTTGATTACATTGTTTTTATAGAGCGCCATACGCTACACACGCGTGTTTATCAAG
GTGTATTTCAACGACGATATCTTAAACATACACCACTATACTGGGAAGTCAAACTGAAGA
GTTTATTATCCGCGAAAATTTCACATTTGCTTCATTGCTTTTTTATATTCACTATTGTAT
GTTTAGTTGTTGCATCCGCGTATTAAGATTTATTCACAGCAGTATTACTGACGTGTGGGG
CACACAAGTATCATGAGTGTGGTGTACTTGATAATAATGGCACCTCACAGTAAATATGCG
ACCCCCACCCACACAATCACAATATGTTCCATTTACAATGAATATACGTGTGTTGCGATG
TAAGCGAGAAAT
| Pfam |
Collagen (IPR008160) - T[79-122] 5.4E-7 - T[179-230] 7.0E-8 |
| SMART |
C1q_dom (IPR001073) - T[439-572] 1.7E-19 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[441-575] 29.368 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[442-576] 9.9E-36 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[445-569] 7.17E-29 |
| Pfam |
C1q_dom (IPR001073) - T[447-567] 1.5E-26 |
| PRINTS |
C1q_dom (IPR001073) - T[456-482] 2.3E-12 - T[483-502] 2.3E-12 - T[528-549] 2.3E-12 - T[560-570] 2.3E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 39.944 % | 119 | 7.85E-28 |
| OTOL1_HUMAN | 34.634 % | 125 | 9.44E-31 |
| CO4A1_HUMAN | 38.389 % | 112 | 1.75E-25 |
