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TRANSCRIPT CARD

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  1. Transcript 'Phfumi.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S972.g03059.01.t

Possible name(s)

SRSF12; SRSF2; SRSF8

Gene model

Phfumi.CG.MTP2014.S972.g03059

Location

S972 [16,096 / 17,010]

Sequences

Amino acid sequence

Length: 196

>Phfumi.CG.MTP2014.S972.g03059.01.p
MSRGGGARPPPGVDTMVSLKVDNLTYRTSPESLKRAFEKYGDVGDVYIPRDRYSKESRGF
AFVRFYDKRDAEDAMDSMDGKMLDGRELRVAMARYGRPNEPARDYGRSRYGGPQSYGRRR
RRSRSYERKRSYSRSRSRSRGRRHSSRSNSRSRSRSRNRDRGRKQSSSPANRRSRSRSPR
SSHSRSRSKSPVANGD

Nucleotide sequence

Length: 588

>Phfumi.CG.MTP2014.S972.g03059.01.t
ATGTCGCGTGGTGGTGGTGCAAGACCTCCCCCTGGAGTTGATACTATGGTTTCATTAAAA
GTTGACAATCTGACATACCGTACTTCACCTGAAAGCTTAAAGAGGGCTTTTGAAAAATAT
GGCGATGTTGGTGATGTCTATATTCCTCGTGATAGGTACTCAAAAGAAAGTCGAGGTTTT
GCATTTGTAAGATTTTATGACAAACGAGATGCAGAAGATGCAATGGATAGCATGGATGGA
AAAATGTTGGATGGTCGAGAGTTAAGAGTGGCAATGGCACGATACGGCCGGCCAAATGAA
CCTGCCAGAGACTATGGTAGAAGCCGTTATGGTGGACCTCAATCGTATGGACGACGTCGC
CGCAGATCAAGGTCATATGAAAGAAAAAGAAGCTATTCAAGATCTCGTTCACGCTCACGT
GGCAGAAGACATTCCAGTCGCAGCAATTCAAGATCCAGAAGCCGTTCCAGGAATAGAGAT
CGTGGTAGAAAGCAAAGTTCTTCTCCGGCTAACAGACGAAGCCGCTCAAGATCTCCCCGC
AGCTCCCATTCGAGATCAAGATCCAAGTCTCCTGTTGCAAATGGTGAT

InterProScan

Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[6-111] 5.1E-26
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[10-124] 2.42E-31
ProSiteProfiles
RRM_dom (IPR000504) - T[17-95] 19.417
SMART
RRM_dom (IPR000504) - T[18-91] 5.9E-25
Pfam
RRM_dom (IPR000504) - T[20-89] 3.0E-21

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SRSF2_HUMAN 83.516 % 160 7.26E-50
SRSF8_HUMAN 68.868 % 145 2.3E-43
SRS12_HUMAN 43.182 % 80.9 9.69E-19