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TRANSCRIPT CARD

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  1. Clone 'AHC0AAA178YK15' > 
  2. Transcript 'KH2012:KH.C1.425.v1....' > 
  3. Transcript 'KH2012:KH.C2.437.v1....' > 
  4. Clone 'cien53695' > 
  5. Transcript 'Phfumi.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S2449.g04859.02.t

Possible name(s)

LAMC1; LAMC3; NTN1

Gene model

Phfumi.CG.MTP2014.S2449.g04859

Location

S2449 [9,589 / 10,720]

Sequences

Amino acid sequence

Length: 377

>Phfumi.CG.MTP2014.S2449.g04859.02.p
MCQRRTKRKDEGSNPSAFAYVLFVFSLFALVDSTCKGRSDTQCCANKVPVQCTPNFENIA
MNKAVEVSETCGVPKNEKFCRRTEGPVGFTRVCDVCKRSGRKSHPARFLTDINDTGRLTY
WQSKSVGVSPQRDITLTISFGKQFELAYISMEFFSRLPRALIIYKSMNHGDTWEPYQYYA
EDCHGYFGMRSKEFANGTNEREVLCKTFENQDQVRGGSVVFNPTLGRPSGNDVEESFIMQ
DWVTATDVRFVLDPQNPRQSLRSGRAVGTLNVANKRRETYTMNHALNPTVTKGVVITPST
GPTDEFLFKHYAINDISIGGTCKCNGHASSCSVKKGKLSCDCRHNTDGVNCEKCKAFYHQ
RPWKRATRSNANECVGE

Nucleotide sequence

Length: 1,131

>Phfumi.CG.MTP2014.S2449.g04859.02.t
ATGTGCCAACGGCGGACTAAACGAAAAGACGAGGGTTCGAATCCCAGCGCCTTCGCATAC
GTTTTATTCGTGTTTTCATTGTTCGCTCTCGTCGACTCGACTTGCAAGGGACGGAGCGAC
ACGCAATGTTGTGCGAACAAAGTGCCGGTGCAATGCACACCAAACTTCGAGAACATTGCC
ATGAACAAAGCAGTCGAAGTGTCGGAAACGTGCGGTGTACCGAAGAACGAAAAATTTTGT
CGACGCACTGAGGGCCCAGTCGGGTTCACGCGGGTTTGCGATGTCTGCAAGAGAAGTGGA
CGGAAATCTCACCCCGCGAGATTTCTAACTGACATTAACGACACCGGTAGGCTGACGTAC
TGGCAATCGAAGTCAGTTGGTGTGAGCCCGCAGCGTGACATTACTCTCACTATCTCGTTC
GGGAAACAATTCGAACTCGCGTACATCTCCATGGAGTTCTTCTCCCGTCTTCCACGGGCG
CTGATCATTTACAAGTCGATGAACCACGGCGACACATGGGAACCTTACCAGTACTATGCC
GAAGACTGCCACGGCTACTTCGGCATGCGAAGCAAGGAGTTCGCCAACGGAACGAACGAG
CGAGAAGTCTTGTGCAAAACCTTTGAGAACCAGGACCAAGTTCGAGGCGGAAGTGTTGTG
TTCAACCCGACGCTGGGCCGACCATCGGGAAACGATGTAGAAGAGAGTTTTATTATGCAG
GACTGGGTAACGGCGACCGATGTTCGTTTTGTGCTCGATCCGCAAAACCCGCGTCAATCA
CTGCGCAGCGGCCGTGCTGTAGGGACCCTGAATGTCGCAAACAAACGTCGTGAGACGTAC
ACAATGAACCACGCCCTCAACCCGACAGTTACCAAAGGGGTTGTGATCACGCCGTCCACC
GGCCCTACAGATGAGTTCCTGTTCAAGCACTACGCTATCAACGACATCAGCATAGGAGGG
ACTTGTAAGTGCAACGGTCACGCATCGAGCTGCTCGGTAAAGAAGGGTAAATTGTCGTGC
GACTGTCGTCACAACACTGACGGGGTGAATTGCGAGAAATGCAAAGCTTTCTACCACCAA
CGGCCGTGGAAAAGAGCGACCAGGAGCAATGCAAATGAATGTGTCGGTGAG

InterProScan

Gene3D
Laminin_N_sf (IPR038684) - T[29-285] 5.4E-59 - T[289-342] 2.3E-11
SMART
Laminin_N (IPR008211) - T[46-288] 1.5E-48
ProSiteProfiles
Laminin_N (IPR008211) - T[48-321] 39.892
Pfam
Laminin_N (IPR008211) - T[52-320] 2.3E-54
Pfam
Laminin_EGF (IPR002049) - T[322-369] 1.1E-6
SMART
Laminin_EGF (IPR002049) - T[322-374] 2.7E-6
ProSitePatterns
Laminin_EGF (IPR002049) - T[340-374] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LAMC1_HUMAN 35.736 % 206 6.2E-59
LAMC3_HUMAN 33.333 % 193 1.48E-54
NET1_HUMAN 37.126 % 222 6.53E-67