Login
Help

GENE CARD

Submit your Data

  1. Gene 'Phmamm.CG.MTP2014.S4...'

Gene Card

Best human hits

SRSF12; SRSF2; SRSF8

Species

P.mammillata

Unique Gene ID

Phmamm.g00008436

Gene Model ID

Phmamm.CG.MTP2014.S413.g08436

Location

S413:7609..8905

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S413.g08436.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

17 results

AHC0AAA2YG04

Plate: Plate_2_G04

AHC0AAA24YC12

Plate: Plate_24_C12

AHC0AAA6YH17

Plate: Plate_6_H17

AHC0AAA28YP07

Plate: Plate_28_P07

AHC0AAA31YO23

Plate: Plate_31_O23

AHC0AAA55YN21

Plate: Plate_55_N21

AHC0AAA57YO03

Plate: Plate_57_O03

AHC0AAA73YE06

Plate: Plate_73_E06

AHC0AAA79YK10

Plate: Plate_79_K10

AHC0AAA141YK06

Plate: Plate_141_K06

AHC0AAA150YG07

Plate: Plate_150_G07

AHC0AAA96YJ08

Plate: Plate_96_J08

AHC0AAA173YD12

Plate: Plate_173_D12

AHC0AAA174YA18

Plate: Plate_174_A18

AHC0AAA190YL18

Plate: Plate_190_L18

AHC0AAA252YL12

Plate: Plate_252_L12

AHC0AAA55YP23

Plate: Plate_55_P23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
RRM_dom Pfam RNA recognition motif domain
RRM_dom SMART RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain

GOSlim

24 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
transcription corepressor activity Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytosol Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
unfolded protein binding Blast molecular function
extracellular exosome Orthology cellular component
negative regulation of nucleic acid-templated transcription Orthology biological process
regulation of gene expression Orthology biological process
protein kinase binding Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
nuclear body Orthology cellular component

GO (Orthology)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
mitotic cell cycle Hs biological process
regulation of alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
transcription corepressor activity Hs molecular function
RNA binding Hs molecular function
protein kinase C binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
cytosol Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
RNA splicing Hs biological process
nuclear speck Hs cellular component
mRNA 3'-end processing Hs biological process
interchromatin granule Hs cellular component
pre-mRNA binding Hs molecular function
regulation of RNA splicing Hs biological process
extracellular exosome Hs cellular component
negative regulation of nucleic acid-templated transcription Hs biological process

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 160 1.17e-49
transcription corepressor activity Hs molecular function 160 1.17e-49
RNA binding Hs molecular function 160 1.17e-49
protein kinase C binding Hs molecular function 160 1.17e-49
protein binding Hs molecular function 160 1.17e-49
nucleus Hs cellular component 160 1.17e-49
nucleoplasm Hs cellular component 160 1.17e-49
spliceosomal complex Hs cellular component 160 1.17e-49
cytosol Hs cellular component 160 1.17e-49
nuclear speck Hs cellular component 160 1.17e-49
interchromatin granule Hs cellular component 160 1.17e-49
pre-mRNA binding Hs molecular function 160 1.17e-49
RS domain binding Hs molecular function 84.0 9.67e-20
unfolded protein binding Hs molecular function 84.0 9.67e-20
extracellular exosome Hs cellular component 160 1.17e-49

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.42E-31