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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S3...'

Gene Card

Best human hits

VPS36

Species

P.mammillata

Unique Gene ID

Phmamm.g00007965

Gene Model ID

Phmamm.CG.MTP2014.S374.g07965

Location

S374:37086..42244

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S374.g07965.01.t
Phmamm.CG.MTP2014.S374.g07965.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

13 results

AHC0AAA42YE19

Plate: Plate_42_E19

AHC0AAA59YF13

Plate: Plate_59_F13

AHC0AAA71YG20

Plate: Plate_71_G20

AHC0AAA71YO11

Plate: Plate_71_O11

AHC0AAA112YH24

Plate: Plate_112_H24

AHC0AAA138YP15

Plate: Plate_138_P15

AHC0AAA86YL24

Plate: Plate_86_L24

AHC0AAA90YD12

Plate: Plate_90_D12

AHC0AAA92YJ07

Plate: Plate_92_J07

AHC0AAA173YO12

Plate: Plate_173_O12

AHC0AAA175YM12

Plate: Plate_175_M12

AHC0AAA242YJ21

Plate: Plate_242_J21

AHC0AAA92YJ05

Plate: Plate_92_J05

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
GLUE_dom ProSiteProfiles Vacuolar protein sorting protein 36, GLUE domain
GLUE_dom Pfam Vacuolar protein sorting protein 36, GLUE domain
Vps36 PANTHER Vacuolar protein sorting protein 36
PH-like_dom_sf Gene3D PH-like domain superfamily
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily

GOSlim

24 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
lysosome Orthology cellular component
endosome Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
protein C-terminus binding Orthology molecular function
protein transport Orthology biological process
membrane Orthology cellular component
extracellular exosome Orthology cellular component
membrane part Orthology cellular component
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
macromolecular complex Orthology cellular component
binding Orthology molecular function
intracellular transport Orthology biological process
anion binding Orthology molecular function
intracellular protein transport Orthology biological process
vacuole Orthology cellular component
proteolysis Orthology biological process
establishment of protein localization to organelle Orthology biological process

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ESCRT II complex Hs cellular component
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
lysosome Hs cellular component
endosome Hs cellular component
late endosome Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
protein C-terminus binding Hs molecular function
lipid binding Hs molecular function
protein transport Hs biological process
membrane Hs cellular component
endosomal transport Hs biological process
macroautophagy Hs biological process
late endosome membrane Hs cellular component
phosphatidylinositol-3-phosphate binding Hs molecular function
endosome transport via multivesicular body sorting pathway Hs biological process
multivesicular body assembly Hs biological process
ubiquitin binding Hs molecular function
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Hs biological process
extracellular exosome Hs cellular component

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ESCRT II complex Hs cellular component 467 5.88e-165
protein binding Hs molecular function 467 5.88e-165
nucleus Hs cellular component 467 5.88e-165
cytoplasm Hs cellular component 467 5.88e-165
lysosome Hs cellular component 467 5.88e-165
endosome Hs cellular component 467 5.88e-165
late endosome Hs cellular component 467 5.88e-165
cytosol Hs cellular component 467 5.88e-165
protein C-terminus binding Hs molecular function 467 5.88e-165
lipid binding Hs molecular function 467 5.88e-165
membrane Hs cellular component 467 5.88e-165
late endosome membrane Hs cellular component 467 5.88e-165
phosphatidylinositol-3-phosphate binding Hs molecular function 467 5.88e-165
ubiquitin binding Hs molecular function 467 5.88e-165
extracellular exosome Hs cellular component 467 5.88e-165

GO (InterProScan)

4 results

GO Term Analysis Type e-value
ESCRT II complex PANTHER cellular component 2.6E-135
phosphatidylinositol-3-phosphate binding Pfam molecular function 6.4E-15
endosome transport via multivesicular body sorting pathway PANTHER biological process 2.6E-135
ubiquitin binding PANTHER molecular function 2.6E-135

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