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GENE CARD

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  1. Gene 'KH2012:KH.L20.10'

Gene Card

Best human hits

VPS36

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012061

Gene Model ID

KH2012:KH.L20.10

Location

KhL20:381269..385368

Transcript Models and Sequences

  KH2012:KH.L20.10.v1.B.SL3-1
KH2012:KH.L20.10.v1.R.ND1-1
KH2012:KH.L20.10.v2.B.SL2-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000021972
Collections

Gateway full ORF

1 result

cien111391

Plate: VES87_L21

Gene collection 1 (N. Satoh)

1 result

cieg047l23

Plate: R1CiGC23a08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
PH-like_dom_sf Gene3D PH-like domain superfamily
GLUE_dom ProSiteProfiles Vacuolar protein sorting protein 36, GLUE domain
Vps36 PANTHER Vacuolar protein sorting protein 36
GLUE_dom Pfam Vacuolar protein sorting protein 36, GLUE domain

GOSlim

24 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
lysosome Orthology cellular component
endosome Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
protein C-terminus binding Orthology molecular function
protein transport Orthology biological process
membrane Orthology cellular component
extracellular exosome Orthology cellular component
membrane part Orthology cellular component
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
macromolecular complex Orthology cellular component
binding Orthology molecular function
intracellular transport Orthology biological process
anion binding Orthology molecular function
intracellular protein transport Orthology biological process
vacuole Orthology cellular component
proteolysis Orthology biological process
establishment of protein localization to organelle Orthology biological process

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ESCRT II complex Hs cellular component
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
lysosome Hs cellular component
endosome Hs cellular component
late endosome Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
protein C-terminus binding Hs molecular function
lipid binding Hs molecular function
protein transport Hs biological process
membrane Hs cellular component
endosomal transport Hs biological process
macroautophagy Hs biological process
late endosome membrane Hs cellular component
phosphatidylinositol-3-phosphate binding Hs molecular function
endosome transport via multivesicular body sorting pathway Hs biological process
multivesicular body assembly Hs biological process
ubiquitin binding Hs molecular function
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway Hs biological process
extracellular exosome Hs cellular component

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ESCRT II complex Hs cellular component 213 5.84e-67
protein binding Hs molecular function 213 5.84e-67
nucleus Hs cellular component 213 5.84e-67
cytoplasm Hs cellular component 213 5.84e-67
lysosome Hs cellular component 213 5.84e-67
endosome Hs cellular component 213 5.84e-67
late endosome Hs cellular component 213 5.84e-67
cytosol Hs cellular component 213 5.84e-67
protein C-terminus binding Hs molecular function 213 5.84e-67
lipid binding Hs molecular function 213 5.84e-67
membrane Hs cellular component 213 5.84e-67
late endosome membrane Hs cellular component 213 5.84e-67
phosphatidylinositol-3-phosphate binding Hs molecular function 213 5.84e-67
ubiquitin binding Hs molecular function 213 5.84e-67
extracellular exosome Hs cellular component 213 5.84e-67

GO (InterProScan)

4 results

GO Term Analysis Type e-value
ESCRT II complex PANTHER cellular component 3.7E-95
phosphatidylinositol-3-phosphate binding Pfam molecular function 5.4E-14
endosome transport via multivesicular body sorting pathway PANTHER biological process 3.7E-95
ubiquitin binding PANTHER molecular function 3.7E-95

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