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GENE CARD

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  1. Gene 'KH2012:KH.L108.56'

Gene Card

Best human hits

DEPDC1; DEPDC1B; DEPDC7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010653

Gene Model ID

KH2012:KH.L108.56

Location

KhL108:401417..405489

Transcript Models and Sequences

  KH2012:KH.L108.56.v1.B.nonSL2-1
KH2012:KH.L108.56.v1.B.nonSL3-1
KH2012:KH.L108.56.v1.B.nonSL4-1
KH2012:KH.L108.56.v1.B.nonSL5-1
KH2012:KH.L108.56.v1.B.nonSL6-1
KH2012:KH.L108.56.v1.B.nonSL8-1
KH2012:KH.L108.56.v1.B.SL1-1
KH2012:KH.L108.56.v2.B.SL7-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000001224
Collections

Gateway full ORF

2 results

cien29290

Plate: VES74_P23

cima817113

Plate: VES59_G04

Gene collection 1 (N. Satoh)

2 results

cilv026b09

Plate: R1CiGC27a24

cign050j13

Plate: R1CiGC42h03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Rho_GTPase_activation_prot SUPERFAMILY Rho GTPase activation protein
Rho_GTPase_activation_prot Gene3D Rho GTPase activation protein
RhoGAP_dom Pfam Rho GTPase-activating protein domain
DEP_dom SMART DEP domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
DEP_dom Pfam DEP domain

GOSlim

15 results

GO Term Annotation Origin Type
GTPase activator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
signal transduction Orthology biological process
cell migration Orthology biological process
positive regulation of Wnt signaling pathway Orthology biological process
intracellular signal transduction Orthology biological process
positive regulation of GTPase activity Orthology biological process
negative regulation of transcription, DNA-templated Orthology biological process
macromolecular complex Orthology cellular component
small GTPase mediated signal transduction Orthology biological process
regulation of signal transduction Orthology biological process

GO (Orthology)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
GTPase activator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
signal transduction Hs biological process
cell migration Hs biological process
transcriptional repressor complex Hs cellular component
positive regulation of Wnt signaling pathway Hs biological process
intracellular signal transduction Hs biological process
positive regulation of GTPase activity Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
regulation of small GTPase mediated signal transduction Hs biological process

GO (Blast)

5 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
GTPase activator activity Hs molecular function 333 7.37e-109
protein binding Hs molecular function 234 1.36e-68
nucleus Hs cellular component 234 1.36e-68
cytosol Hs cellular component 333 7.37e-109
transcriptional repressor complex Hs cellular component 234 1.36e-68

GO (InterProScan)

2 results

GO Term Analysis Type e-value
signal transduction Gene3D biological process 8.6E-14
intracellular signal transduction SMART biological process 2.2E-13

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