- Gene 'KH2012:KH.C2.520'
Gene Card
Best human hits
CWC22; NOM1
Unique Gene ID
Cirobu.g00004727
Gene Model ID
KH2012:KH.C2.520
Location
KhC2:2653629..2658201
Transcript Models and Sequences
KH2012:KH.C2.520.v1.A.ND1-1
KH2012:KH.C2.520.v1.A.nonSL2-1
KH2012:KH.C2.520.v1.A.nonSL3-1
KH2012:KH.C2.520.v1.A.nonSL4-1
KH2012:KH.C2.520.v1.A.nonSL5-1
KH2012:KH.C2.520.v2.A.ND1-1
KH2012:KH.C2.520.v2.A.nonSL2-1
KH2012:KH.C2.520.v2.A.nonSL3-1
KH2012:KH.C2.520.v2.A.nonSL4-1
KH2012:KH.C2.520.v2.A.nonSL5-1
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000005248 |
| NCBI Reference Sequence | XM_002123255.4 |
Gateway full ORF
2 results
cien64602
Plate: VES80_I08
cien186928
Plate: VES99_A05
Gene collection 1 (N. Satoh)
2 results
cieg049o01
Plate: R1CiGC23h07
ciht042g16
Plate: R1CiGC44o17
n/a
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InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| MIF4G-like_typ-3 | SMART | MIF4G-like, type 3 |
| Initiation_fac_eIF4g_MI | Pfam | Initiation factor eIF-4 gamma, MA3 |
| MIF4G-like_typ-3 | Pfam | MIF4G-like, type 3 |
| MIF4-like_sf | Gene3D | MIF4G-like domain superfamily |
| Initiation_fac_eIF4g_MI | ProSiteProfiles | Initiation factor eIF-4 gamma, MA3 |
| Initiation_fac_eIF4g_MI | SMART | Initiation factor eIF-4 gamma, MA3 |
| ARM-type_fold | SUPERFAMILY | Armadillo-type fold |
GOSlim
11 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| RNA binding | Orthology | molecular function |
| binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Blast | cellular component |
| nucleolus | Orthology | cellular component |
| cytosol | Blast | cellular component |
| nuclear speck | Blast | cellular component |
| neurogenesis | Orthology | biological process |
| nuclear part | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
GO (Orthology)
7 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| RNA binding | Hs | molecular function |
| binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleolus | Hs | cellular component |
| neurogenesis | Hs | biological process |
| ribosomal small subunit biogenesis | Hs | biological process |
GO (Blast)
12 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| RNA binding | Hs | molecular function | 409 | 1.33e-130 |
| binding | Hs | molecular function | 409 | 1.33e-130 |
| protein binding | Hs | molecular function | 409 | 1.33e-130 |
| nucleus | Hs | cellular component | 409 | 1.33e-130 |
| nucleoplasm | Hs | cellular component | 74.7 | 1.36e-13 |
| spliceosomal complex | Hs | cellular component | 74.7 | 1.36e-13 |
| nucleolus | Hs | cellular component | 409 | 1.33e-130 |
| cytosol | Hs | cellular component | 74.7 | 1.36e-13 |
| nuclear speck | Hs | cellular component | 74.7 | 1.36e-13 |
| U2-type catalytic step 1 spliceosome | Hs | cellular component | 74.7 | 1.36e-13 |
| U2-type catalytic step 2 spliceosome | Hs | cellular component | 74.7 | 1.36e-13 |
| catalytic step 2 spliceosome | Hs | cellular component | 74.7 | 1.36e-13 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| RNA binding | Pfam | molecular function | 1.6E-12 |
| binding | SUPERFAMILY | molecular function | 2.19E-23 |
| protein binding | Pfam | molecular function | 1.6E-12 |
