Aniseed - Gene card

Gene 'KH2012:KH.C13.22'

Gene Card

Best human hits

SP7; SP8; SP9

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003422

Gene Model ID

KH2012:KH.C13.22

Location

KhC13:1701387..1709327

Transcript Models and Sequences

KH2012:KH.C13.22.v1.R.ND2-1
KH2012:KH.C13.22.v2.A.SL3-1
KH2012:KH.C13.22.v3.A.ND1-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000001565
NCBI Reference Sequence	NM_001093741.1
NCBI Reference Sequence	XM_018814551.1
NCBI Reference Sequence	XM_018814552.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg037e18

Plate: R1CiGC21o18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	SMART	Zinc finger C2H2-type

GOSlim

20 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
metal ion binding	Orthology	molecular function
cytosol	Orthology	cellular component
positive regulation of cell proliferation	Orthology	biological process
cell differentiation	Orthology	biological process
multicellular organism development	Orthology	biological process
enzyme binding	Orthology	molecular function
anatomical structure morphogenesis	Orthology	biological process
animal organ development	Orthology	biological process
immune system process	Orthology	biological process

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
osteoblast differentiation	Hs	biological process
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
dorsal/ventral pattern formation	Hs	biological process
proximal/distal pattern formation	Hs	biological process
DEAD/H-box RNA helicase binding	Hs	molecular function
embryonic limb morphogenesis	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
hematopoietic stem cell differentiation	Hs	biological process
positive regulation of stem cell differentiation	Hs	biological process
cytosol	Hs	cellular component
positive regulation of cell proliferation	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	124	9.21e-32
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	161	5.59e-45
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	124	9.21e-32
nucleic acid binding	Hs	molecular function	161	5.59e-45
DNA binding	Hs	molecular function	161	5.59e-45
nucleus	Hs	cellular component	161	5.59e-45
cytoplasm	Hs	cellular component	124	9.21e-32
DEAD/H-box RNA helicase binding	Hs	molecular function	124	9.21e-32
metal ion binding	Hs	molecular function	161	5.59e-45

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	0.0014