Aniseed - Gene card

Gene 'KH2012:KH.C10.583'

Gene Card

Best human hits

ABCD2; ABCD3; ABCD4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001815

Gene Model ID

KH2012:KH.C10.583

Location

KhC10:2578084..2585310

Transcript Models and Sequences

KH2012:KH.C10.583.v1.A.ND1-1
KH2012:KH.C10.583.v1.A.SL3-1
KH2012:KH.C10.583.v2.A.ND2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005591
NCBI Reference Sequence	XM_002130564.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cits044e16

Plate: R1CiGC35b03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
ABC1_TM_dom	ProSiteProfiles	ABC transporter type 1, transmembrane domain
ABC1_TM_dom	Pfam	ABC transporter type 1, transmembrane domain
ABC1_TM_sf	SUPERFAMILY	ABC transporter type 1, transmembrane domain superfamily
AAA+_ATPase	SMART	AAA+ ATPase domain
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
ABC_transporter-like	Pfam	ABC transporter-like
ABC_transporter_CS	ProSitePatterns	ABC transporter, conserved site
ABC_transporter-like	ProSiteProfiles	ABC transporter-like
ABC1_TM_sf	Gene3D	ABC transporter type 1, transmembrane domain superfamily

GOSlim

24 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
protein binding	Blast	molecular function
ATP binding	Orthology	molecular function
mitochondrion	Blast	cellular component
mitochondrial inner membrane	Blast	cellular component
lysosomal membrane	Orthology	cellular component
peroxisome	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
cytosol	Blast	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
protein homodimerization activity	Blast	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
transmembrane transport	Orthology	biological process
intracellular organelle part	Orthology	cellular component
whole membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
cellular aromatic compound metabolic process	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
plasma membrane part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organic substance transport	Blast	biological process
ion transport	Blast	biological process
intracellular organelle lumen	Blast	cellular component

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
ATP binding	Hs	molecular function
lysosomal membrane	Hs	cellular component
peroxisome	Hs	cellular component
peroxisomal membrane	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
cobalamin metabolic process	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
ATPase activity	Hs	molecular function
ATPase activity, coupled to transmembrane movement of substances	Hs	molecular function
ATP-binding cassette (ABC) transporter complex	Hs	cellular component
transmembrane transport	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	538	0.0
long-chain fatty acid transporter activity	Hs	molecular function	214	1.00e-60
protein binding	Hs	molecular function	214	1.00e-60
ATP binding	Hs	molecular function	538	0.0
mitochondrion	Hs	cellular component	214	1.00e-60
mitochondrial inner membrane	Hs	cellular component	214	1.00e-60
lysosomal membrane	Hs	cellular component	538	0.0
peroxisome	Hs	cellular component	538	0.0
peroxisomal membrane	Hs	cellular component	538	0.0
peroxisomal matrix	Hs	cellular component	214	1.00e-60
endoplasmic reticulum membrane	Hs	cellular component	538	0.0
cytosol	Hs	cellular component	214	1.00e-60
membrane	Hs	cellular component	538	0.0
integral component of membrane	Hs	cellular component	538	0.0
ATPase activity	Hs	molecular function	538	0.0
ATPase activity, coupled to transmembrane movement of substances	Hs	molecular function	538	0.0
protein homodimerization activity	Hs	molecular function	214	1.00e-60
ATP-binding cassette (ABC) transporter complex	Hs	cellular component	538	0.0
intracellular membrane-bounded organelle	Hs	cellular component	214	1.00e-60
protein self-association	Hs	molecular function	214	1.00e-60

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
ATP binding	Pfam	molecular function	1.9E-67
integral component of membrane	Pfam	cellular component	1.9E-67
ATPase activity	Pfam	molecular function	2.3E-18
ATPase activity, coupled to transmembrane movement of substances	Pfam	molecular function	1.9E-67
transmembrane transport	Pfam	biological process	1.9E-67