Aniseed - Gene card

Gene 'KH2012:KH.C10.13'

Gene Card

Best human hits

TAF1B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001327

Gene Model ID

KH2012:KH.C10.13

Location

KhC10:3317468..3322358

Transcript Models and Sequences

KH2012:KH.C10.13.v1.A.ND2-1
KH2012:KH.C10.13.v1.A.nonSL3-1
KH2012:KH.C10.13.v1.A.nonSL4-1
KH2012:KH.C10.13.v1.A.nonSL5-1
KH2012:KH.C10.13.v1.A.nonSL6-1
KH2012:KH.C10.13.v1.A.nonSL7-1
KH2012:KH.C10.13.v1.A.nonSL9-1
KH2012:KH.C10.13.v1.A.SL1-1
KH2012:KH.C10.13.v1.A.SL8-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_009861748.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl028k21

Plate: R1CiGC12a15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
TF_Rrn7_Zf	Pfam	Transcription initiation factor Rrn7, Zinc-finger
TAF1B/Rrn7	PANTHER	RNA polymerase I transcription initiation factor TAF1B/Rrn7

GOSlim

15 results

GO Term	Annotation Origin	Type
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
metal ion binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
DNA-templated transcription, initiation	Orthology	biological process
transcription regulatory region sequence-specific DNA binding	Orthology	molecular function
macromolecular complex	Orthology	cellular component
transcription factor binding	Orthology	molecular function
positive regulation of gene expression	Orthology	biological process

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase I CORE element sequence-specific DNA binding	Hs	molecular function
transcription factor activity, RNA polymerase I CORE element binding transcription factor recruiting	Hs	molecular function
RNA polymerase I transcriptional preinitiation complex assembly	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
RNA polymerase transcription factor SL1 complex	Hs	cellular component
nucleolus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase I promoter	Hs	biological process
termination of RNA polymerase I transcription	Hs	biological process
TBP-class protein binding	Hs	molecular function
positive regulation of gene expression, epigenetic	Hs	biological process
metal ion binding	Hs	molecular function
extracellular exosome	Hs	cellular component
RNA polymerase I core factor complex	Hs	cellular component

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase I CORE element sequence-specific DNA binding	Hs	molecular function	60.1	2.21e-09
transcription factor activity, RNA polymerase I CORE element binding transcription factor recruiting	Hs	molecular function	60.1	2.21e-09
DNA binding	Hs	molecular function	60.1	2.21e-09
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	60.1	2.21e-09
protein binding	Hs	molecular function	60.1	2.21e-09
nucleus	Hs	cellular component	60.1	2.21e-09
nucleoplasm	Hs	cellular component	60.1	2.21e-09
RNA polymerase transcription factor SL1 complex	Hs	cellular component	60.1	2.21e-09
nucleolus	Hs	cellular component	60.1	2.21e-09
TBP-class protein binding	Hs	molecular function	60.1	2.21e-09
metal ion binding	Hs	molecular function	60.1	2.21e-09
extracellular exosome	Hs	cellular component	60.1	2.21e-09
RNA polymerase I core factor complex	Hs	cellular component	60.1	2.21e-09

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
RNA polymerase I CORE element sequence-specific DNA binding	PANTHER	molecular function	5.6E-88
RNA polymerase I transcriptional preinitiation complex assembly	PANTHER	biological process	5.6E-88
transcription from RNA polymerase I promoter	PANTHER	biological process	5.6E-88
RNA polymerase I core factor complex	PANTHER	cellular component	5.6E-88