Aniseed - Gene card

External Database Gene Card

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WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

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Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
LSM_dom_sf	SUPERFAMILY	LSM domain superfamily
LSM_dom_euk/arc	Pfam	LSM domain, eukaryotic/archaea-type
Sm_D1	CDD	Small nuclear ribonucleoprotein D1
LSM_dom_euk/arc	SMART	LSM domain, eukaryotic/archaea-type
LSm4/Sm_D1/D3	PANTHER	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3

GOSlim

18 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
RNA processing	Orthology	biological process
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear body	Blast	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular transport	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
intracellular non-membrane-bounded organelle	Blast	cellular component
enzyme binding	Blast	molecular function

GO (Orthology)

31 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
commitment complex	Hs	cellular component
spliceosomal complex assembly	Hs	biological process
spliceosomal snRNP assembly	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U5 snRNP	Hs	cellular component
U1 snRNP	Hs	cellular component
U2 snRNP	Hs	cellular component
U4 snRNP	Hs	cellular component
U12-type spliceosomal complex	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
RNA processing	Hs	biological process
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
small nuclear ribonucleoprotein complex	Hs	cellular component
methylosome	Hs	cellular component
pICln-Sm protein complex	Hs	cellular component
SMN-Sm protein complex	Hs	cellular component
nuclear import	Hs	biological process
U2-type catalytic step 2 spliceosome	Hs	cellular component
prespliceosome	Hs	cellular component
precatalytic spliceosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component
spliceosomal tri-snRNP complex	Hs	cellular component
U1 snRNP binding	Hs	molecular function

GO (Blast)

35 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
commitment complex	Hs	cellular component	163	1.91e-53
P-body	Hs	cellular component	41.6	6.31e-06
RNA binding	Hs	molecular function	163	1.91e-53
protein binding	Hs	molecular function	163	1.91e-53
nucleus	Hs	cellular component	163	1.91e-53
nucleoplasm	Hs	cellular component	163	1.91e-53
spliceosomal complex	Hs	cellular component	163	1.91e-53
U5 snRNP	Hs	cellular component	163	1.91e-53
U7 snRNP	Hs	cellular component	45.1	5.17e-07
U1 snRNP	Hs	cellular component	163	1.91e-53
U2 snRNP	Hs	cellular component	163	1.91e-53
U4 snRNP	Hs	cellular component	163	1.91e-53
U6 snRNP	Hs	cellular component	41.6	6.31e-06
U12-type spliceosomal complex	Hs	cellular component	163	1.91e-53
cytoplasm	Hs	cellular component	163	1.91e-53
cytosol	Hs	cellular component	163	1.91e-53
Cajal body	Hs	cellular component	45.1	5.17e-07
nuclear body	Hs	cellular component	45.1	5.17e-07
U6 snRNA binding	Hs	molecular function	41.6	6.31e-06
Ral GTPase binding	Hs	molecular function	41.6	6.31e-06
intracellular ribonucleoprotein complex	Hs	cellular component	163	1.91e-53
small nuclear ribonucleoprotein complex	Hs	cellular component	163	1.91e-53
methylosome	Hs	cellular component	163	1.91e-53
pICln-Sm protein complex	Hs	cellular component	163	1.91e-53
SMN-Sm protein complex	Hs	cellular component	163	1.91e-53
U4/U6 x U5 tri-snRNP complex	Hs	cellular component	41.6	6.31e-06
U2-type catalytic step 2 spliceosome	Hs	cellular component	163	1.91e-53
prespliceosome	Hs	cellular component	163	1.91e-53
precatalytic spliceosome	Hs	cellular component	163	1.91e-53
catalytic step 2 spliceosome	Hs	cellular component	163	1.91e-53
histone pre-mRNA DCP binding	Hs	molecular function	45.1	5.17e-07
U7 snRNA binding	Hs	molecular function	45.1	5.17e-07
spliceosomal tri-snRNP complex	Hs	cellular component	163	1.91e-53
U1 snRNP binding	Hs	molecular function	163	1.91e-53
Lsm1-7-Pat1 complex	Hs	cellular component	41.6	6.31e-06

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
spliceosomal snRNP assembly	CDD	biological process	1.4849E-58
RNA processing	PANTHER	biological process	1.3E-48

Gene Card

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