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GENE CARD

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Gene Card

Best human hits

SHMT1; SHMT2

Species

B.schlosseri

Unique Gene ID

Boschl.g00013139

Gene Model ID

Boschl.CG.Botznik2013.chrUn.g13139

Location

chrUn:84565784..84574334

Transcript Models and Sequences

  Boschl.CG.Botznik2013.chrUn.g13139.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Ser_HO-MeTrfase CDD Serine hydroxymethyltransferase
PyrdxlP-dep_Trfase_dom1 Gene3D Pyridoxal phosphate-dependent transferase domain 1
Ser_HO-MeTrfase PIRSF Serine hydroxymethyltransferase
Ser_HO-MeTrfase Hamap Serine hydroxymethyltransferase
PyrdxlP-dep_Trfase_major Gene3D Pyridoxal phosphate-dependent transferase, major domain
Ser_HO-MeTrfase_PLP_BS ProSitePatterns Serine hydroxymethyltransferase, pyridoxal phosphate binding site
PyrdxlP-dep_Trfase SUPERFAMILY Pyridoxal phosphate-dependent transferase

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
translation repressor activity, nucleic acid binding Hs molecular function
catalytic activity Hs molecular function
glycine hydroxymethyltransferase activity Hs molecular function
thiol-dependent ubiquitin-specific protease activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
cytosol Hs cellular component
dTMP biosynthetic process Hs biological process
glycine metabolic process Hs biological process
glycine biosynthetic process Hs biological process
L-serine metabolic process Hs biological process
one-carbon metabolic process Hs biological process
L-allo-threonine aldolase activity Hs molecular function
purine nucleobase biosynthetic process Hs biological process
protein deubiquitination Hs biological process
amino acid binding Hs molecular function
transferase activity Hs molecular function
negative regulation of translation Hs biological process
glycine biosynthetic process from serine Hs biological process
pyridoxal phosphate binding Hs molecular function
tetrahydrofolate interconversion Hs biological process
identical protein binding Hs molecular function
protein homodimerization activity Hs molecular function
carnitine biosynthetic process Hs biological process
tetrahydrofolate metabolic process Hs biological process
folic acid metabolic process Hs biological process
mRNA 5'-UTR binding Hs molecular function
protein tetramerization Hs biological process
protein homotetramerization Hs biological process
extracellular exosome Hs cellular component
serine binding Hs molecular function

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
translation repressor activity, nucleic acid binding Hs molecular function 641 0.0
chromatin binding Hs molecular function 565 0.0
catalytic activity Hs molecular function 641 0.0
glycine hydroxymethyltransferase activity Hs molecular function 641 0.0
thiol-dependent ubiquitin-specific protease activity Hs molecular function 641 0.0
protein binding Hs molecular function 641 0.0
nucleus Hs cellular component 641 0.0
cytoplasm Hs cellular component 641 0.0
mitochondrion Hs cellular component 641 0.0
mitochondrial inner membrane Hs cellular component 565 0.0
mitochondrial intermembrane space Hs cellular component 565 0.0
mitochondrial matrix Hs cellular component 565 0.0
cytosol Hs cellular component 641 0.0
methyltransferase activity Hs molecular function 565 0.0
L-allo-threonine aldolase activity Hs molecular function 641 0.0
microtubule cytoskeleton Hs cellular component 565 0.0
membrane Hs cellular component 565 0.0
amino acid binding Hs molecular function 641 0.0
transferase activity Hs molecular function 641 0.0
pyridoxal phosphate binding Hs molecular function 641 0.0
mitochondrial nucleoid Hs cellular component 565 0.0
identical protein binding Hs molecular function 641 0.0
protein homodimerization activity Hs molecular function 641 0.0
mRNA 5'-UTR binding Hs molecular function 641 0.0
extracellular exosome Hs cellular component 641 0.0
BRISC complex Hs cellular component 565 0.0
serine binding Hs molecular function 641 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
catalytic activity Gene3D molecular function 1.4E-201
glycine hydroxymethyltransferase activity CDD molecular function 0.0
glycine biosynthetic process from serine CDD biological process 0.0
pyridoxal phosphate binding CDD molecular function 0.0
tetrahydrofolate interconversion CDD biological process 0.0

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