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Data

Aniseed Data

C.robusta
C.savignyi
H.roretzi
P.mammillata
B.villosa
B.Schlosseri
B.leachii
M.Oculata
M.Occulta
M.Occidentalis
H.aurantium
P.fumigata
O.dioica

Genomic data

Assembly
	Joined Scaffold (Fasta) 32.6 MB
	Joined Scaffold (GFF3) 16 kB

Coding Gene Models
	KH2012 complete with NCBI gene features (GFF3) 10.9 MB
	KH2012 complete with NCBI Gene Model to Best Blast Hit mapping 327.7 kB

sgRNA
	CionaWholeGenome_sgRNA_score_primer 159.1 MB

Transcript Models
	KH2012 complete with NCBI (Nucleotides Fasta) 14.8 MB
	KH2012 complete with NCBI (Proteins Fasta - from Met) 5 MB

Functional Annotations
	GO annotations(GAF) 16.6 MB
	GOSlim annotations(GAF) 1.4 MB
	GOSlim ontology 85.2 kB
	InterPro annotations 2.8 MB
	UniProt Blast 1.6 MB

Genes Phylogeny
	Ciona robusta Orthology Trees (v11, SiLiX) 6.4 MB

Old Transcript Models
	Ensembl [Obsolete] 10.1 MB
	JGI v1.0 [Obsolete] 8.7 MB
	Kyoto Grail 2005 [Obsolete] 10.8 MB
	KH2012 vs Ensembl (Blast) 615.2 kB
	KH2012 vs JGI (Blast) 472 kB
	KH2012 vs Kyoto Grail (Blast) 501.4 kB

cDNA sequences
	cDNA Sequences including ESTs (fasta) 231.1 MB
	ESTs <—> Genome (Exonerate GFF3) 43.6 MB
	ESTs <—> KH Transcript Models (Blast) 30.6 MB

cDNA clone collections
	Ciona Gateway full ORF plate coordinates 388 kB
	Ciona gene collection 1 Satoh file 90.1 kB
	Ciona Gene Clones Correspondence file 446.4 kB

Libraries
	Sequenced cDNA Libraries 956 bytes
	Libraries <—> cDNA Clones 24.1 MB

Selex seq
	SELEX-seq table S1-S3, Nitta et al. 2019 2.7 MB
	SELEX-seq all rounds 6-mer enrichments and PWMs 32.5 MB
	SELEX-seq best round 6-mer enrichments 4.5 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 57.4 kB

Biometry data
	Biometry data for the whole embryo collection 66 kB

Contact Surface
	Contact surface data 120.6 kB
	Surface/Volume data 21.9 kB

Expression data

In situ data
	ISH 1.8 MB

Regulatory Regions
	Cis-regulatory modules 486 kB

RNASeq data
	FPKM/RLE data 3.6 MB

Genomic data

Assembly
	Ciona savignyi genome ENS81 fasta and gff3 49.9 MB

Coding Gene Models
	Ciona savignyi transcript fasta and gff3 9.9 MB

Transcript Models
	Ciona savignyi (Proteins Fasta) 3.4 MB

Functional Annotations
	GO annotations(GAF) 16.6 MB
	GOSlim annotations(GAF) 2.1 MB
	GOSlim ontology 85.2 kB
	InterPro annotations 2 MB
	UniProt Blast 1.4 MB

cDNA sequences
	cDNA Sequences including ESTs (fasta) 11.8 MB
	ESTs <—> Genome (Exonerate GFF3) 1.3 MB
	ESTs <—> Transcript Models (Blast) 2.2 MB

Genes Phylogeny
	Ciona savignyi Orthology Trees (v11, SiLiX) 5.6 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 24.4 kB

Expression data

Genomic data

Assembly
	Halocynthia roretzi genome MTP2014 fasta and gff3 34.6 MB

Coding Gene Models
	Halocynthia roretzi transcripts MTP2014 fasta and gff3 12 MB

Transcript Models
	Halocynthia roretzi (Proteins Fasta) 5.4 MB

cDNA sequences
	ESTs (fasta) 19.6 MB

Functional annotations
	GO annotations(GAF) 16.3 MB
	GOSlim annotations(GAF) 2.5 MB
	GOSlim ontology 85.2 kB
	InterPro annotations 1.4 MB
	UniProt Blast 1 MB

Genes Phylogeny
	Halocynthia roretzi Orthology Trees (v11, SiLiX) 6.3 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 25.9 kB
Biometry data
	Biometry data for the whole embryo collection 1.3 kB

Surface
	Contact surface data 1.3 kB
	Surface/Volume data 516 bytes

Expression data

In situ data
	ISH 273.2 kB

RNASeq data
	FPKM/RLE data 3.5 MB

Genomic data

Assembly
	Phallusia mammillata genome MTP2014 fasta 59.6 MB

Coding Gene Models
	Phallusia mammillata transcript fasta and gff3 11.6 MB

Transcript Models
	Phallusia mammillata (proteins Fasta) 6.3 MB

cDNA sequences
	ESTs (fasta) 37.3 MB

Functional annotations
	GO annotations(GAF) 18 MB
	GOSlim annotations(GAF) 2.8 MB
	GOSlim ontology 85.2 kB
	InterPro annotations 1.7 MB
	UniProt Blast 1.3 MB

Genes Phylogeny
	Phallusia mammillata Orthology Trees (v11, SiLiX) 6.4 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 26.1 kB
Biometry data
	Biometry data for the whole embryo collection 12.2 kB

Surface
	Contact surface data 31.7 kB
	Surface/Volume data 3.5 kB

Expression data

RNASeq data
	FPKM/RLE data 3.9 MB

Genomic data

Anatomy data

Biometry data
	Biometry data for the whole embryo collection 4.1 kB

Surface
	Contact surface data 9.8 kB
	Surface/Volume data 1.1 kB

Expression data

Genomic data

Assembly
	Botryllus schlosseri genome fasta and gff3 173.2 MB

Coding Gene Models
	Botryllus schlosseri transcript fasta and gff3 14.3 MB

Transcript Models
	Botryllus schlosseri (Proteins Fasta) 7.8 MB

cDNA sequences
	cDNA Sequences including ESTs (fasta) 21.8 MB
	ESTs <—> Genome (Exonerate GFF3) 1.9 MB
	ESTs <—> Transcript Models (Blast) 1.7 MB

Functional Annotations
	GO annotations(GAF) 25.9 MB
	GOSlim annotations(GAF) 3.9 MB
	GOSlim ontology 85.2 kB
	InterPro annotations 1.7 MB
	UniProt Blast 1.5 MB

Genes Phylogeny
	Botryllus schlosseri Orthology Trees (v11, SiLiX) 5.1 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 7.5 kB

Expression data

Genomic data

Assembly
	Botrylloides leachii genome fasta and gff3 43.2 MB

Coding Gene Models
	Botrylloides leachii transcript fasta and gff3 12.3 MB

Transcript Models
	Botrylloides leachii (Proteins Fasta) 4.7 MB

Functional Annotations
	GO annotations(GAF) 16 MB
	GOSlim annotations(GAF) 2.5 MB
	InterPro annotations 1.3 MB
	UniProt Blast 947.5 kB

Training Sets
	Training set for Augustus (Gene Model Prediction) 201.4 kB
	Training set for Repeat Modeler (Repeat Elements Prediction) 38.3 MB
	Training set for SNAP 14.9 kB

Anatomy data

Expression data

Genomic data

Assembly
	Molgula oculata genome fasta and gff3 39.5 MB

Coding Gene Models
	Molgula oculata transcript fasta and gff3 9 MB

Transcript Models
	Molgula oculata (Proteins Fasta) 4.2 MB

Functional Annotations
	GO annotations(GAF) 15.8 MB
	GOSlim annotations(GAF) 2.5 MB
	GOSlim ontology 85.2 kB
	InterPro annotations 1.3 MB
	UniProt Blast 971.2 kB

Genes Phylogeny
	Molgula oculata Orthology Trees (v11, SiLiX) 5.9 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 25.9 kB

Expression data

Genomic data

Assembly
	Molgula occulta genome fasta and gff3 (august 2015) 44.7 MB

Functional Annotations
	GO annotations(GAF) 12.3 MB
	InterPro annotations 370.8 kB
	UniProt Blast 1.3 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 25.9 kB

Expression data

Genomic data

Assembly
	Molgula occidentalis genome fasta and gff3 (august 2015) 64.1 MB

Coding Gene Models
	Molgula occidentalis transcript fasta and gff3 10.7 MB

Transcript Models
	Molgula occidentalis (Proteins Fasta) 5.3 MB

Functional Annotations
	GO annotations(GAF) 19.1 MB
	GOSlim annotations(GAF) 3.1 MB
	InterPro annotations 1.4 MB
	UniProt Blast 1.1 MB

Genes Phylogeny
	Molgula occidentalis Orthology Trees (v11, SiLiX) 5.9 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 25.9 kB

Expression data

Genomic data

Assembly
	Halocynthia aurantium genome MTP2014 fasta 36.3 MB

Coding Gene Models
	Halocynthia aurantium transcript fasta and gff3 6.8 MB

Transcript Models
	Halocynthia aurantium (proteins Fasta) 3.3 MB

Functional Annotations
	GO annotations(GAF) 13.2 MB
	GOSlim annotations(GAF) 2.1 MB
	InterPro annotations 1.1 MB
	UniProt Blast 813 kB

Genes Phylogeny
	Halocynthia aurantium Orthology Trees (v11, SiLiX) 5.7 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 25.6 kB

Expression data

Genomic data

Assembly
	Phallusia fumigata genome MTP2014 fasta 66.7 MB

Coding Gene Models
	Phallusia fumigata transcript fasta and gff3 4.7 MB

Transcript Models
	Phallusia fumigata (proteins Fasta) 2.2 MB

Functional Annotations
	GO annotations(GAF) 11.2 MB
	GOSlim annotations(GAF) 1.7 MB
	InterPro annotations 853.2 kB
	UniProt Blast 697.2 kB

Genes Phylogeny
	Phallusia fumigata Orthology Trees (v11, SiLiX) 5.4 MB

Anatomy data

Ontologies
	Anatomical territories - Developmental stages (OBO) 25.8 kB

Expression data

Genomic data

Assembly
	Oikopleura dioica genome fasta 16.6 MB

Coding Gene Models
	Oikopleura dioica transcript fasta and gff3 9 MB

Transcript Models
	Oikopleura dioica (proteins Fasta) 4.3 MB

Functional Annotations
	GO annotations(GAF) 9.4 MB
	GOSlim annotations(GAF) 1.3 MB
	InterPro annotations 919.5 kB
	UniProt Blast 912.6 kB

Anatomy data

Expression data