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CIS-REGULATION

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  1. Region 'REG00000418'

Cis-regulatory Region

Name

Ci-Pax6 -0.2kb/+1kb +3.7kb/7kb

Short name

n/a

Region ID

REG00000418

Status

Not Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Steven Q. Irvine (2008-07-01)

Annotator

Émilie Carmona (2008-07-01)

Curator

Émilie Carmona (2008-07-01)

View position in WashU

Description

This region is able to drive no expression of Ci-Pax6 in mid tailbud stage. At late tailbud stage, only ectopic expression of Ci-Pax6 is driven in trunk mesenchyme.

Hierarchy of Regulatory Regions

Modification of Ci-Pax6 -2500/7000 by deletion

Regulated gene(s)

KH2012:KH.C9.68 (PAX3; PAX4; PAX6)

Construct(s) made to test this region

CONS00000399: Pax6 -0.2kb/1kb_3.7kb/7kb::LacZ

Show in situ data
Overview of functional TF binding sites in this region

5,702,2295,709,428

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [5,702,229 / 5,709,428] on scaffold KhC9

Show sequence

Length: 7,202

ATACACATATACATCTGGATTGCTAAGCTGGTATATAGGAATGAATTGGCAGAACTTGAA
TAGGAAAAGGTTTTGTATACAACATGTAGTCTAGTGCCGTGTAGGTATGGGTAAAATAGA
CCATGTTTTTATTCCATTTTATCATCCTATTTAGCAGCAAACAAAGAATATTTATAGAAA
TATACAAATATGTCCAGTAAAAGTGTGTTGTTGATTGTTAAAAATAATGAAAAAAAATCT
ATCTTCCCCCACTATATATATGCATCGGGTTTTAATTTCATACTAAAATATTTATTCATT
ATAACTGTATATATAGGTTATGTGACTCGTAACTCAGGCTAACAGTATATATTGAAATAT
ATTCTATTTTATCTTATGTATAAGATATACGAGAAGATGAGAAAACTGTCATATGATTGA
TTTGTATTTGATTTTTGATTCCGGATTACTTTCTAATTCCATCATGAGCCACGTTTTGTG
CAGTGGAGGGTAAACGTCAAAATATAACACGCGTTGACAGCTTTAATACACATACGGGTT
GTAGCGTTAGCGGGCGACATTTGTGACGTAGGGGATTCAATTTTCGGAGGGCGGGTGGGG
ATTAAAGCAGCAAAAACTAAAAATCGTGTTAAGGCGACGTGACCCGTGTCGGCCTACACA
TGATTAAAGTCTCGGCGCAATCAGAATGTTGTCATATCGCAGATGATGTCGACATCTTGG
CATCAAGGCTTTGATTATTATTTTTTGTAAATAATTAGCCCGCGCGTCGATGCAACTTAT
GGGTGAAATATTTGACATGGGAACCAATACTTTTGCGGCGGTATGGATATTTGTGCTGTT
GTCTTTTTGACAGGGGTTAACGCTCGCTCAATTGAGTTAATGCATTCCAATCCAAAGTGA
CTAACTCTTGAAGCGAAACTGAAAACGGATTCACGCCGATTTACGGATCCGCATATGAAG
GATAAAACACTCTATATGCGTCATTATTTCTCACGGAGCAGAAATCTACTATGATTCAGA
CCTAAAGTATATCCCAAGGAAAGCATTTCTGTTTATATCTGTTTAATCGCGGGTTAAAAG
CGAGCTTAGCACGTTTTTAACTGCTGGTCGAAGCCAGGTATTGGAATCTGAGAGCGTGTG
TAATCTAGCAGAAACTTTAGGACCGAATCGGCTGGCGGAAAGATAAACAATACGAATGCG
GTCGCGAATGGTGAAAACACACCTGCGGAGTTGAGACCTGGAAATCTGTTCTGTATGTTA
CTAAAAAATAACTCGATTTTTGGCATTGCTTCACACGCCTATTGCTGGGGGTGCGGGTAA
AAAGGAAAGAGATATATACGCGGCTGCTTTATGCTGCTGTGTTGGACAACGTCGGCAGCC
AGTTTACCCTAATCCACATGTTCAAATTAATTTCCTTCCAGCTGAGTGGCGAAGTAGCTT
ACATGGTAGCGGGGTAGGGACGTGCACTGCCCGTTGTGAGAAACTATTCTGAGATGGATT
ATCCCGAATCGGTCGTAGACGATAATCGTTTTTCGGGCGAATTGTAAGCAACTGATTTCT
TTGCAAAAAATGTGAATAAAATATCAGTTCATTTGACCCTGCGTTCGGCTTAGGTTAAAC
GTCTTCGTATACTTTGTTTTACAGGCGAAGAATCGTGGCTGAGTTCTGACAGTATATACA
ATGGTAGATTGAAGGACATTGTCCGCGAATACTTCGTCATGGTGCGTGGATTGTTGTCGA
ACAGTCGAGGCCCAGCGGGTTTGTCGGCGCTAAGACCCCATTCATTCCGATGTGAAATGG
AGCGAATGAGGAGAGAAGCAAAAGCTTAAAAATCAATGAGGATAAATCCTCCTCTCGGAG
GCTGTAAGTCGCGGAAGAGAAATACGTTGCGAGAAACTTTCTGCCTCGTCTTTTCCACCT
TCTCTGATTTTTACTGACGATTTTCGTTGATCAACTTGACTTAAAACTTTAGCAAAGATA
TAACTCGAATAAAACATGACCCCAAAACTCTAACGTAGGTATATGCTATGCTCGGCTAAC
CCCTGCTGGGGTGGCAGCTATCGCCGTACAAACGTGAGAATGTGCGCTTATTCAGGCTTG
AAATAGAGTTATGTTGCAAGCTACGGAATGTCAACAGAATTCGCTAACAAACTACTTAGC
TCTGGCCGTGTCACGGATGTCTTTCATTCTCTCCAAAATCGATCGCTCATAATCGAGTAG
GCCGGGTTTTAAGCGAAACTTCGGCGGGGTTTTTGGTCGTCGAGAGCCCGCCGACGGATC
GATGACACGCCGGTATCGATCGCGGTGCAACTTGATTCATAATAACTCGGTTTATCTTGG
AATTAGCTGCAGCGTCAGATAGGAAATGCGGGGCTGGGCTGGCCGGTTGCGGTCGACGGA
TCTTTACGTGACGCGACGGGGCGAGAGATCCAAAGAGCTTTTATTATTTATTTTCGAACG
CGGCTCGGGAATCGTCTTGAAATCCCGTCCAATTAATCATTAATACGGCTGTCAGTGGTC
GGGAAATAGTTTTTATTTTTTCAACTAATGGAAACCAGAGACCCGTTGATGGTTTAAGCT
CAACGTAATTATTTTAGAGAGGCAAACAGAGGTGACAAAGCAAGACAACTTTAAGAAAAT
CCCAAACCACCAAAATCGACGGGCAGCAGTACTTTGCGCTTTTAATGCCGCGTGTCGCCC
ACAGCGCGGGGCAAAGGACAAATTTCTAGTTAAGATTGAAATCAGTACACTTGCCTCCTT
GGCACCGTGGTCGTCGATAATCATTTTAAAAACTCGATAATTCAAAGCGTTGACACGCGG
CGGCTTGCATGTCGACGCGATGATCACACAGAGATAAAGCTAATCCTACGCACAACTGTT
TGGCCCACAAAACTAAAATACTGGTGAAAAATATGGGAAAACCAAAGTAACGAGCAATCT
TGATGAAAAGGTTTTTGCGTAAGTTAAAAAGTAATTAAACCTGCACACACAATCGTGAAA
GCATATTTTTTTACACAGACTTTATAAATTCCAATGCAAACATGACACCCCATGTGTGAT
ATAATTTTCATTTTAAACATTTCCGTTTAAAATTAAAACCACCATGTTTGTATTAAAACT
GATAGAAAACCCGTGTTTTATGCACCCTTATATAAATTCGTTTATAAATACCGCGATTCA
CAAAAGTGACTTTAAATAAATGGACACCATATATATACGTCATTTGTAAGCTAAACAGGG
GTCTTACCTTTCAGTCCCATAAGACCTTCGGCCGCA------------------------
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------------------------------------------TTTAAAATATTTCGCCGA
AAATGTCCAGAGACAGAAAATGTAAATTTTCCTAAATCAGAAAAGTCCTTTATATATAAC
AGTATATGTCTGTCATTAAAATAATGTCAGTAAGGTTTAAAATTATAAGGTAAACAATTC
ATAAAGGCATGCAAAAATTACAAAGAATATGTCTTGGTGGTAATTAATATGTTTTTTTGT
AT

Reference(s)

Irvine et al. (2008). Cis-regulatory organization of the Pax6 gene in the ascidian Ciona intestinalis. Dev. Biol. 317(2):649-59

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